Aliases for GORAB-AS1 Gene

Subcategory (RNA class) for GORAB-AS1 Gene

lncRNA

Quality Score for this RNA gene is

15

Aliases for GORAB-AS1 Gene

  • GORAB Antisense RNA 1 2 3 5
  • HSALNG0008377 169
  • NONHSAG003431 94
  • Lnc-KIFAP3-2 170

External Ids for GORAB-AS1 Gene

Summaries for GORAB-AS1 Gene

GeneCards Summary for GORAB-AS1 Gene

GORAB-AS1 (GORAB Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for GORAB-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for GORAB-AS1 Gene

Genomics for GORAB-AS1 Gene

GeneHancer (GH) Regulatory Elements for GORAB-AS1 Gene

Promoters and enhancers for GORAB-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J170537 Enhancer 0.9 Ensembl ENCODE 750.6 +0.3 348 2.4 FOXA1 HLF SP1 MLLT1 ZNF687 IKZF1 RXRA FOXA2 PKNOX1 TRIM22 GORAB-AS1 PRRX1 GORAB
GH01J170539 Enhancer 0.6 Ensembl 750.6 -1.2 -1153 0.2 ZNF24 RELA MLLT1 IKZF1 IKZF2 PKNOX1 TRIM22 DPF2 BCL11A BMI1 GORAB-AS1 PRRX1 GORAB piR-52294-008
GH01J170530 Promoter/Enhancer 2 EPDnew Ensembl ENCODE CraniofacialAtlas 7.8 +5.9 5947 3.6 E2F8 FOXK2 SIN3A ZBTB40 LCORL SMARCE1 RBPJ POLR2A TCF7L2 ATF1 GORAB PRRC2C C1orf112 SCYL3 METTL18 RN7SL333P SELP GORAB-AS1 ENSG00000271811
GH01J170585 Promoter/Enhancer 1.2 FANTOM5 Ensembl ENCODE CraniofacialAtlas 10.8 -48.5 -48515 2.4 MLLT1 ZSCAN4 PKNOX1 NFE2 STAT1 NR2F1 GATA3 ATF7 ENSG00000225545 GORAB GORAB-AS1 PRRX1 piR-52294-008
GH01J170562 Enhancer 1.1 Ensembl ENCODE CraniofacialAtlas 11.5 -25.3 -25253 3.6 ZNF148 MAFK ZNF687 PRDM1 FOSL2 IKZF1 POLR2A ZNF512 IKZF2 CHD2 GORAB GORAB-AS1 KIFAP3 piR-52294-008 ENSG00000225545
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around GORAB-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for GORAB-AS1 Gene

Genomic Locations for GORAB-AS1 Gene
chr1:170,460,347-170,538,348
(GRCh38/hg38)
Size:
78,002 bases
Orientation:
Minus strand
chr1:170,429,594-170,501,788
(GRCh37/hg19)
Size:
72,195 bases
Orientation:
Minus strand

Genomic View for GORAB-AS1 Gene

Genes around GORAB-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
GORAB-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GORAB-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for GORAB-AS1 Gene

Proteins for GORAB-AS1 Gene

Post-translational modifications for GORAB-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GORAB-AS1 Gene

Domains & Families for GORAB-AS1 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for GORAB-AS1 Gene

Function for GORAB-AS1 Gene

Phenotypes From GWAS Catalog for GORAB-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GORAB-AS1 Gene

Localization for GORAB-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for GORAB-AS1 Gene

Pathways & Interactions for GORAB-AS1 Gene

PathCards logo

SuperPathways for GORAB-AS1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for GORAB-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GORAB-AS1 Gene

Drugs & Compounds for GORAB-AS1 Gene

No Compound Related Data Available

Transcripts for GORAB-AS1 Gene

mRNA/cDNA for GORAB-AS1 Gene

(1) REFSEQ mRNAs :
(4) Additional mRNA sequences :
(5) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(19) RNACentral transcripts :
(11) LncBook transcripts :
(16) LNCipedia transcripts :
(9) NONCODE transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for GORAB-AS1 Gene

No ASD Table

Relevant External Links for GORAB-AS1 Gene

GeneLoc Exon Structure for
GORAB-AS1
ECgene alternative splicing isoforms for
GORAB-AS1

Expression for GORAB-AS1 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GORAB-AS1 Gene

Orthologs for GORAB-AS1 Gene

Evolution for GORAB-AS1 Gene

ENSEMBL:
Gene Tree for GORAB-AS1 (if available)
TreeFam:
Gene Tree for GORAB-AS1 (if available)

No data available for Orthologs for GORAB-AS1 Gene

Paralogs for GORAB-AS1 Gene

No data available for Paralogs for GORAB-AS1 Gene

Variants for GORAB-AS1 Gene

Sequence variations from dbSNP and Humsavar for GORAB-AS1 Gene

SNP ID Clin Chr 01 pos Variation AA Info Type
rs151006839 uncertain-significance, Geroderma osteodysplastica 170,532,247(-) C/G intron_variant
rs1557999318 likely-pathogenic, Geroderma osteodysplastica 170,532,148(-) GA/CT intron_variant
rs759432675 uncertain-significance, Geroderma osteodysplastica 170,532,176(-) G/GG intron_variant
rs1000041855 -- 170,479,154(-) C/A intron_variant
rs1000046338 -- 170,508,928(-) C/G/T intron_variant

Additional Variant Information for GORAB-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
GORAB-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for GORAB-AS1 Gene

Disorders for GORAB-AS1 Gene

No disorders were found for GORAB-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GORAB-AS1 Gene

Publications for GORAB-AS1 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 56
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 56

No data available for External Links for GORAB-AS1 Gene

Products for GORAB-AS1 Gene

Sources for GORAB-AS1 Gene