Aliases for GORAB-AS1 Gene

Subcategory (RNA class) for GORAB-AS1 Gene

lncRNA

Number of RNA Genes sources:

3 / 14

Aliases for GORAB-AS1 Gene

  • GORAB Antisense RNA 1 2 3 5
  • NONHSAG003431 92
  • HSALNG0008377 167
  • Lnc-KIFAP3-2 168
  • GORAB-AS1 2

External Ids for GORAB-AS1 Gene

Summaries for GORAB-AS1 Gene

GeneCards Summary for GORAB-AS1 Gene

GORAB-AS1 (GORAB Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for GORAB-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for GORAB-AS1 Gene

Genomics for GORAB-AS1 Gene

GeneHancer (GH) Regulatory Elements for GORAB-AS1 Gene

Promoters and enhancers for GORAB-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J170537 Enhancer 0.9 Ensembl ENCODE 500.7 +0.3 348 2.4 ZBTB40 SIN3A FOXA2 FOS NBN SMARCA5 JUND STAT3 NR2F1 IKZF1 GORAB-AS1 PRRX1 GORAB
GH01J170539 Enhancer 0.7 Ensembl 500.7 -1.2 -1153 0.2 ZBTB40 EP300 RELA BCL11A TCF12 ARNT MEF2B NBN SMARCA5 BATF GORAB-AS1 PRRX1 GORAB piR-52294-008
GH01J170530 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE CraniofacialAtlas 7.8 +5.9 5947 3.6 FOXK2 ZBTB40 SIN3A NRF1 TCF12 POLR2G GTF2E2 PHF8 ZFX POLR2A GORAB C1orf112 GORAB-AS1 ENSG00000271811
GH01J170585 Promoter/Enhancer 1.3 FANTOM5 Ensembl ENCODE CraniofacialAtlas 10.9 -48.5 -48515 2.4 HNRNPK SRF USF1 NFE2 GATA3 NR2F1 STAT1 ATF7 PKNOX1 ZSCAN4 ENSG00000225545 GORAB GORAB-AS1 PRRX1 piR-52294-008
GH01J170562 Enhancer 1.1 Ensembl ENCODE CraniofacialAtlas 11.5 -25.3 -25253 3.6 JUND FOS REST BCL11A NR2F2 ZNF266 FOSL1 ZNF184 FOSL2 MEF2B SCYL3 PRRC2C C1orf112 GORAB RN7SL333P METTL18 GORAB-AS1 KIFAP3 piR-52294-008 ENSG00000225545
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around GORAB-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for GORAB-AS1 Gene

Genomic Locations for GORAB-AS1 Gene
chr1:170,460,347-170,538,348
(GRCh38/hg38)
Size:
78,002 bases
Orientation:
Minus strand
chr1:170,429,594-170,501,788
(GRCh37/hg19)
Size:
72,195 bases
Orientation:
Minus strand

Genomic View for GORAB-AS1 Gene

Genes around GORAB-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
GORAB-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GORAB-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for GORAB-AS1 Gene

Proteins for GORAB-AS1 Gene

Post-translational modifications for GORAB-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GORAB-AS1 Gene

Domains & Families for GORAB-AS1 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for GORAB-AS1 Gene

Function for GORAB-AS1 Gene

Phenotypes From GWAS Catalog for GORAB-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GORAB-AS1 Gene

Localization for GORAB-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for GORAB-AS1 Gene

Pathways & Interactions for GORAB-AS1 Gene

PathCards logo

SuperPathways for GORAB-AS1 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for GORAB-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for GORAB-AS1 Gene

Drugs & Compounds for GORAB-AS1 Gene

No Compound Related Data Available

Transcripts for GORAB-AS1 Gene

mRNA/cDNA for GORAB-AS1 Gene

20 RNACentral transcripts :
1 REFSEQ mRNAs :
4 NCBI additional mRNA sequence :
5 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
9 NONCODE transcripts :
11 LncBook transcripts :
16 LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for GORAB-AS1 Gene

No ASD Table

Relevant External Links for GORAB-AS1 Gene

GeneLoc Exon Structure for
GORAB-AS1

Expression for GORAB-AS1 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GORAB-AS1 Gene

Orthologs for GORAB-AS1 Gene

Evolution for GORAB-AS1 Gene

ENSEMBL:
Gene Tree for GORAB-AS1 (if available)
TreeFam:
Gene Tree for GORAB-AS1 (if available)

No data available for Orthologs for GORAB-AS1 Gene

Paralogs for GORAB-AS1 Gene

No data available for Paralogs for GORAB-AS1 Gene

Variants for GORAB-AS1 Gene

Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP for GORAB-AS1 Gene

SNP ID Clinical significance and condition Chr 01 pos Variation AA Info Type
745570 Likely Benign: not provided 170,532,175(-) C/T NON_CODING_TRANSCRIPT_VARIANT,FIVE_PRIME_UTR_VARIANT
780278 Benign: not provided 170,532,244(-) A/. NON_CODING_TRANSCRIPT_VARIANT,NO_SEQUENCE_ALTERATION
804379 Likely Pathogenic: Geroderma osteodysplastica 170,532,227(-) GC/G FRAMESHIFT_VARIANT,NON_CODING_TRANSCRIPT_VARIANT,FIVE_PRIME_UTR_VARIANT
rs151006839 Uncertain Significance: Geroderma osteodysplastica 170,532,247(-) C/G MISSENSE_VARIANT,NON_CODING_TRANSCRIPT_VARIANT,FIVE_PRIME_UTR_VARIANT
rs1557999318 Likely Pathogenic: Geroderma osteodysplastica 170,532,148(-) GA/CT INITIATIOR_CODON_VARIANT,MISSENSE_VARIANT

Additional dbSNP identifiers (rs#s) for GORAB-AS1 Gene

Additional Variant Information for GORAB-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
GORAB-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for GORAB-AS1 Gene

Disorders for GORAB-AS1 Gene

No disorders were found for GORAB-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GORAB-AS1 Gene

Publications for GORAB-AS1 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 54
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 54

No data available for Mastermind for GORAB-AS1 Gene

Products for GORAB-AS1 Gene

Sources for GORAB-AS1 Gene