Aliases for GOLGA8R Gene

Aliases for GOLGA8R Gene

  • Golgin A8 Family Member R 2 3 5
  • Golgin Subfamily A Member 8R 3 4
  • Golgin A8 Family, Member R 2
  • GOLGA8R 5

External Ids for GOLGA8R Gene

Previous GeneCards Identifiers for GOLGA8R Gene

  • GC15P032893
  • GC15M030706

Summaries for GOLGA8R Gene

GeneCards Summary for GOLGA8R Gene

GOLGA8R (Golgin A8 Family Member R) is a Protein Coding gene. An important paralog of this gene is GOLGA8O.

Additional gene information for GOLGA8R Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for GOLGA8R Gene

Genomics for GOLGA8R Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for GOLGA8R Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around GOLGA8R on the GeneHancer Hub at the UCSC Golden Path

Cistromic (ChIP-Seq) regulation report from SPP (The Signaling Pathways Project) for GOLGA8R

Genomic Locations for GOLGA8R Gene

Genomic Locations for GOLGA8R Gene
chr15:30,400,562-30,414,260
(GRCh38/hg38)
Size:
13,699 bases
Orientation:
Minus strand
chr15:30,695,943-30,706,463
(GRCh37/hg19)
Size:
10,521 bases
Orientation:
Minus strand

Genomic View for GOLGA8R Gene

Genes around GOLGA8R on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
GOLGA8R Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GOLGA8R Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for GOLGA8R Gene

Proteins for GOLGA8R Gene

  • Protein details for GOLGA8R Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    I6L899-GOG8R_HUMAN
    Recommended name:
    Golgin subfamily A member 8R
    Protein Accession:
    I6L899
    Secondary Accessions:
    • F5GYM5

    Protein attributes for GOLGA8R Gene

    Size:
    631 amino acids
    Molecular mass:
    71490 Da
    Quaternary structure:
    No Data Available

    Alternative splice isoforms for GOLGA8R Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for GOLGA8R Gene

Post-translational modifications for GOLGA8R Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for GOLGA8R Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for GOLGA8R Gene

Domains & Families for GOLGA8R Gene

Gene Families for GOLGA8R Gene

HGNC:
Human Protein Atlas (HPA):
  • Predicted intracellular proteins

Protein Domains for GOLGA8R Gene

InterPro:
ProtoNet:

Graphical View of Domain Structure for InterPro Entry

I6L899

UniProtKB/Swiss-Prot:

GOG8R_HUMAN :
  • Belongs to the GOLGA8 family.
Family:
  • Belongs to the GOLGA8 family.
genes like me logo Genes that share domains with GOLGA8R: view

No data available for Suggested Antigen Peptide Sequences for GOLGA8R Gene

Function for GOLGA8R Gene

Phenotypes From GWAS Catalog for GOLGA8R Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GOLGA8R Gene

Localization for GOLGA8R Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for GOLGA8R gene
Compartment Confidence
golgi apparatus 3
nucleus 2
cytosol 2

Gene Ontology (GO) - Cellular Components for GOLGA8R Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0000137 Golgi cis cisterna IBA 21873635
GO:0005794 Golgi apparatus IBA 21873635
GO:0005801 cis-Golgi network IBA 21873635
GO:0032580 Golgi cisterna membrane IBA 21873635
genes like me logo Genes that share ontologies with GOLGA8R: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Subcellular locations from the Human Protein Atlas (HPA) for GOLGA8R Gene

Pathways & Interactions for GOLGA8R Gene

PathCards logo

SuperPathways for GOLGA8R Gene

No Data Available

Interacting Proteins for GOLGA8R Gene

Gene Ontology (GO) - Biological Process for GOLGA8R Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0007030 Golgi organization IBA 21873635
GO:0051225 NOT spindle assembly IBA 21873635
genes like me logo Genes that share ontologies with GOLGA8R: view

No data available for Pathways by source and SIGNOR curated interactions for GOLGA8R Gene

Drugs & Compounds for GOLGA8R Gene

No Compound Related Data Available

Transcripts for GOLGA8R Gene

mRNA/cDNA for GOLGA8R Gene

1 REFSEQ mRNAs :
1 NCBI additional mRNA sequence :
2 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Inhibitory RNA Products

  • Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for GOLGA8R

Alternative Splicing Database (ASD) splice patterns (SP) for GOLGA8R Gene

No ASD Table

Relevant External Links for GOLGA8R Gene

GeneLoc Exon Structure for
GOLGA8R

Expression for GOLGA8R Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for GOLGA8R Gene

genes like me logo Genes that share expression patterns with GOLGA8R: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GOLGA8R Gene

Orthologs for GOLGA8R Gene

This gene was present in the common ancestor of chordates.

Orthologs for GOLGA8R Gene

Organism Taxonomy Gene Similarity Type Details
Chimpanzee
(Pan troglodytes)
Mammalia -- 31
  • 89 (a)
OneToMany
Cow
(Bos Taurus)
Mammalia -- 31
  • 28 (a)
OneToMany
Mouse
(Mus musculus)
Mammalia Golga2 31
  • 27 (a)
OneToMany
Dog
(Canis familiaris)
Mammalia -- 31
  • 27 (a)
OneToMany
Platypus
(Ornithorhynchus anatinus)
Mammalia -- 31
  • 26 (a)
OneToMany
Oppossum
(Monodelphis domestica)
Mammalia -- 31
  • 26 (a)
OneToMany
Chicken
(Gallus gallus)
Aves -- 31
  • 22 (a)
OneToMany
Lizard
(Anolis carolinensis)
Reptilia -- 31
  • 21 (a)
OneToMany
Zebrafish
(Danio rerio)
Actinopterygii golga2 31
  • 17 (a)
OneToMany
Species where no ortholog for GOLGA8R was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Eremothecium gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • Alpha proteobacteria (Wolbachia pipientis)
  • Amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • Baker's yeast (Saccharomyces cerevisiae)
  • Barley (Hordeum vulgare)
  • Beta proteobacteria (Neisseria meningitidis)
  • Bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • Common water flea (Daphnia pulex)
  • Corn (Zea mays)
  • E. coli (Escherichia coli)
  • Filamentous fungi (Aspergillus nidulans)
  • Firmicute Bacteria (Streptococcus pneumoniae)
  • Fission Yeast (Schizosaccharomyces pombe)
  • Fruit Fly (Drosophila melanogaster)
  • Green Algae (Chlamydomonas reinhardtii)
  • Honey Bee (Apis mellifera)
  • K. Lactis Yeast (Kluyveromyces lactis)
  • Loblloly Pine (Pinus taeda)
  • Malaria Parasite (Plasmodium falciparum)
  • Medicago Trunc (Medicago Truncatula)
  • Moss (Physcomitrella patens)
  • Orangutan (Pongo pygmaeus)
  • Pig (Sus scrofa)
  • Rainbow Trout (Oncorhynchus mykiss)
  • Rat (Rattus norvegicus)
  • Rice (Oryza sativa)
  • Rice Blast Fungus (Magnaporthe grisea)
  • Schistosome Parasite (Schistosoma mansoni)
  • Sea Anemone (Nematostella vectensis)
  • Sea Vase (Ciona intestinalis)
  • Sea Squirt (Ciona savignyi)
  • Sea Urchin (Strongylocentrotus purpuratus)
  • Sorghum (Sorghum bicolor)
  • Soybean (Glycine max)
  • Stem Rust Fungus (Puccinia graminis)
  • Sugarcane (Saccharum officinarum)
  • Thale Cress (Arabidopsis thaliana)
  • Tomato (Lycopersicon esculentum)
  • Toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • Tropical Clawed Frog (Silurana tropicalis)
  • Wheat (Triticum aestivum)
  • Worm (Caenorhabditis elegans)

Evolution for GOLGA8R Gene

ENSEMBL:
Gene Tree for GOLGA8R (if available)
TreeFam:
Gene Tree for GOLGA8R (if available)

Paralogs for GOLGA8R Gene

Variants for GOLGA8R Gene

Additional dbSNP identifiers (rs#s) for GOLGA8R Gene

Structural Variations from Database of Genomic Variants (DGV) for GOLGA8R Gene

Variant ID Type Subtype PubMed ID
dgv105n111 CNV duplication 26073780
dgv2495n100 CNV loss 25217958
dgv2496n100 CNV gain 25217958
dgv2498n100 CNV gain+loss 25217958
dgv2499n100 CNV loss 25217958
dgv2500n100 CNV gain+loss 25217958
dgv2502n100 CNV gain+loss 25217958
dgv2503n100 CNV loss 25217958
dgv2504n100 CNV gain 25217958
dgv2505n100 CNV loss 25217958
dgv2507n100 CNV loss 25217958
dgv2509n100 CNV gain 25217958
dgv2511n100 CNV loss 25217958
dgv2512n100 CNV loss 25217958
dgv2513n100 CNV loss 25217958
dgv2514n100 CNV loss 25217958
dgv2515n100 CNV gain+loss 25217958
dgv2517n100 CNV loss 25217958
dgv2518n100 CNV gain 25217958
dgv2519n100 CNV loss 25217958
dgv2520n100 CNV loss 25217958
dgv2521n100 CNV loss 25217958
dgv2522n100 CNV gain+loss 25217958
dgv2523n100 CNV gain 25217958
dgv42e203 CNV gain+loss 21179565
dgv4417n54 CNV loss 21841781
dgv4419n54 CNV loss 21841781
dgv4422n54 CNV loss 21841781
dgv4423n54 CNV loss 21841781
esv2421738 CNV duplication 20811451
esv2751526 CNV loss 17911159
esv2760022 CNV gain+loss 17122850
esv3336312 CNV duplication 20981092
esv3584919 CNV gain 24956385
esv3584920 CNV gain 24956385
esv3636024 CNV loss 21293372
esv3892642 CNV gain+loss 25118596
esv997659 CNV gain 20482838
nsv1038958 CNV gain 25217958
nsv1040778 CNV loss 25217958
nsv1041708 CNV gain 25217958
nsv1049226 CNV gain+loss 25217958
nsv1049639 CNV gain+loss 25217958
nsv1148560 OTHER inversion 26484159
nsv1160257 CNV duplication 26073780
nsv1160264 CNV duplication 26073780
nsv428300 CNV loss 18775914
nsv442696 CNV gain 18776908
nsv469586 CNV loss 16826518
nsv518720 CNV gain 19592680
nsv821679 CNV gain 15273396
nsv832948 CNV gain+loss 17160897
nsv9232 CNV gain+loss 18304495
nsv952596 CNV deletion 24416366
nsv977689 CNV duplication 23825009

Variation tolerance for GOLGA8R Gene

Gene Damage Index Score: 0.11; 2.56% of all genes are more intolerant (likely to be disease-causing)

Additional Variant Information for GOLGA8R Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
GOLGA8R

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP for GOLGA8R Gene

Disorders for GOLGA8R Gene

Additional Disease Information for GOLGA8R

No disorders were found for GOLGA8R Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for GOLGA8R Gene

Publications for GOLGA8R Gene

  1. A human interactome in three quantitative dimensions organized by stoichiometries and abundances. (PMID: 26496610) Hein MY … Mann M (Cell 2015) 3
  2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. (PMID: 21873635) Gaudet P … Thomas PD (Briefings in bioinformatics 2011) 3
  3. Analysis of the DNA sequence and duplication history of human chromosome 15. (PMID: 16572171) Zody MC … Nusbaum C (Nature 2006) 4

Products for GOLGA8R Gene

Sources for GOLGA8R Gene