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Aliases for GOLGA8IP Gene

Aliases for GOLGA8IP Gene

  • Golgin A8 Family Member I, Pseudogene 2 3 5
  • Golgi Autoantigen, Golgin Subfamily A, 9 Pseudogene 2 3
  • Golgin A8 Family, Member I 2 3
  • GOLGA8I 3 4
  • GOLGA9P 3 4
  • Golgin Subfamily A Member 8I Pseudogene 4
  • Golgin A8 Family, Member I, Pseudogene 2
  • Putative Golgin Subfamily A Member 8I 4
  • Golgin A9 (Pseudogene) 3
  • Golgin A9, Pseudogene 2

External Ids for GOLGA8IP Gene

Previous HGNC Symbols for GOLGA8IP Gene

  • GOLGA9P
  • GOLGA8I

Previous GeneCards Identifiers for GOLGA8IP Gene

  • GC15P023711
  • GC15P023733
  • GC15P023749
  • GC15P023762
  • GC15P023781
  • GC15P023811

Summaries for GOLGA8IP Gene

GeneCards Summary for GOLGA8IP Gene

GOLGA8IP (Golgin A8 Family Member I, Pseudogene) is a Pseudogene.

UniProtKB/Swiss-Prot for GOLGA8IP Gene

Additional gene information for GOLGA8IP Gene

No data available for Entrez Gene Summary , CIViC summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for GOLGA8IP Gene

Genomics for GOLGA8IP Gene

GeneHancer (GH) Regulatory Elements for GOLGA8IP Gene

Promoters and enhancers for GOLGA8IP Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH15J022616 Enhancer 0.2 Ensembl 600.7 +1.4 1433 0.4 GOLGA8IP GC15M022614
GH15J022617 Enhancer 0.2 Ensembl 600.7 +1.0 953 0.2 GOLGA8IP GC15M022614
GH15J022640 Enhancer 0.2 Ensembl 0.3 -22.4 -22447 0.2 WHAMMP3 GOLGA8IP
GH15J022641 Enhancer 0.2 Ensembl 0.3 -23.0 -23047 0.6 WHAMMP3 GOLGA8IP
GH15J022657 Enhancer 0.2 Ensembl 0.3 -39.8 -39847 0.2 WHAMMP3 GOLGA8IP
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around GOLGA8IP on UCSC Golden Path with GeneCards custom track

Genomic Locations for GOLGA8IP Gene

Genomic Locations for GOLGA8IP Gene
chr15:22,606,022-22,617,854
(GRCh38/hg38)
Size:
11,833 bases
Orientation:
Minus strand
chr15:23,255,242-23,268,823
(GRCh37/hg19)
Size:
13,582 bases
Orientation:
Plus strand

Genomic View for GOLGA8IP Gene

Genes around GOLGA8IP on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
GOLGA8IP Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GOLGA8IP Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for GOLGA8IP Gene

Proteins for GOLGA8IP Gene

  • Protein details for GOLGA8IP Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    A6NC78-GOG8I_HUMAN
    Recommended name:
    Putative golgin subfamily A member 8I
    Protein Accession:
    A6NC78

    Protein attributes for GOLGA8IP Gene

    Size:
    632 amino acids
    Molecular mass:
    71330 Da
    Quaternary structure:
    No Data Available

neXtProt entry for GOLGA8IP Gene

Post-translational modifications for GOLGA8IP Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

No data available for DME Specific Peptides for GOLGA8IP Gene

Domains & Families for GOLGA8IP Gene

Gene Families for GOLGA8IP Gene

Protein Domains for GOLGA8IP Gene

InterPro:
ProtoNet:

Suggested Antigen Peptide Sequences for GOLGA8IP Gene

GenScript: Design optimal peptide antigens:
  • Putative golgin subfamily A member 8I (GOG8I_HUMAN)

Graphical View of Domain Structure for InterPro Entry

A6NC78

UniProtKB/Swiss-Prot:

GOG8I_HUMAN :
  • Belongs to the GOLGA8 family.
Family:
  • Belongs to the GOLGA8 family.
genes like me logo Genes that share domains with GOLGA8IP: view

Function for GOLGA8IP Gene

Molecular function for GOLGA8IP Gene

UniProtKB/Swiss-Prot Function:
May be involved in maintaining Golgi structure.
genes like me logo Genes that share phenotypes with GOLGA8IP: view

Animal Model Products

CRISPR Products

No data available for Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for GOLGA8IP Gene

Localization for GOLGA8IP Gene

Subcellular locations from UniProtKB/Swiss-Prot for GOLGA8IP Gene

Golgi apparatus, Golgi stack membrane; Peripheral membrane protein.

Gene Ontology (GO) - Cellular Components for GOLGA8IP Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0000137 Golgi cis cisterna IBA 21873635
GO:0005794 Golgi apparatus IBA 21873635
GO:0005801 cis-Golgi network IBA 21873635
GO:0032580 Golgi cisterna membrane IBA 21873635
genes like me logo Genes that share ontologies with GOLGA8IP: view

No data available for Subcellular locations from COMPARTMENTS and Subcellular locations from the Human Protein Atlas (HPA) for GOLGA8IP Gene

Pathways & Interactions for GOLGA8IP Gene

PathCards logo

SuperPathways for GOLGA8IP Gene

No Data Available

Interacting Proteins for GOLGA8IP Gene

Selected Interacting proteins: A6NC78-GOG8I_HUMAN for GOLGA8IP Gene via IID

Symbol External ID(s) Details
PRKCE

Gene Ontology (GO) - Biological Process for GOLGA8IP Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0007030 Golgi organization IBA 21873635
GO:0051225 NOT spindle assembly IBA 21873635
genes like me logo Genes that share ontologies with GOLGA8IP: view

No data available for Pathways by source and SIGNOR curated interactions for GOLGA8IP Gene

Drugs & Compounds for GOLGA8IP Gene

No Compound Related Data Available

Transcripts for GOLGA8IP Gene

mRNA/cDNA for GOLGA8IP Gene

(1) Additional mRNA sequences :
(4) Selected AceView cDNA sequences:
(3) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for GOLGA8IP Gene

No ASD Table

Relevant External Links for GOLGA8IP Gene

GeneLoc Exon Structure for
GOLGA8IP
ECgene alternative splicing isoforms for
GOLGA8IP

Expression for GOLGA8IP Gene

Protein differential expression in normal tissues from HIPED for GOLGA8IP Gene

This gene is overexpressed in Pancreas (69.0).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB and MOPED for GOLGA8IP Gene



Protein tissue co-expression partners for GOLGA8IP Gene

NURSA nuclear receptor signaling pathways regulating expression of GOLGA8IP Gene:

GOLGA8IP

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GOLGA8IP Gene

Orthologs for GOLGA8IP Gene

Evolution for GOLGA8IP Gene

ENSEMBL:
Gene Tree for GOLGA8IP (if available)
TreeFam:
Gene Tree for GOLGA8IP (if available)

No data available for Orthologs for GOLGA8IP Gene

Paralogs for GOLGA8IP Gene

No data available for Paralogs for GOLGA8IP Gene

Variants for GOLGA8IP Gene

Sequence variations from dbSNP and Humsavar for GOLGA8IP Gene

SNP ID Clin Chr 15 pos Variation AA Info Type
rs1000202273 -- 22,614,496(-) G/A intron_variant
rs1000577113 -- 22,614,806(-) C/G intron_variant
rs1001177381 -- 22,613,620(-) G/A non_coding_transcript_variant
rs1001428501 -- 22,618,749(-) G/T upstream_transcript_variant
rs1001613635 -- 22,613,309(-) G/A/T intron_variant

Structural Variations from Database of Genomic Variants (DGV) for GOLGA8IP Gene

Variant ID Type Subtype PubMed ID
dgv106n111 OTHER complex 26073780
dgv20e213 CNV loss 24956385
dgv2403n100 CNV gain 25217958
dgv2405n100 CNV gain+loss 25217958
dgv2406n100 CNV gain 25217958
dgv2407n100 CNV gain+loss 25217958
dgv2408n100 CNV loss 25217958
dgv2409n100 CNV loss 25217958
dgv2410n100 CNV gain 25217958
dgv2495n100 CNV loss 25217958
dgv2496n100 CNV gain 25217958
dgv2500n100 CNV gain+loss 25217958
dgv2503n100 CNV loss 25217958
dgv2504n100 CNV gain 25217958
dgv2505n100 CNV loss 25217958
dgv2514n100 CNV loss 25217958
dgv2517n100 CNV loss 25217958
dgv2518n100 CNV gain 25217958
dgv2520n100 CNV loss 25217958
dgv2523n100 CNV gain 25217958
dgv2524n100 CNV loss 25217958
dgv2525n100 CNV loss 25217958
dgv2526n100 CNV loss 25217958
dgv2527n100 CNV loss 25217958
dgv2528n100 CNV loss 25217958
dgv2529n100 CNV gain+loss 25217958
dgv2530n100 CNV gain 25217958
dgv42e203 CNV gain+loss 21179565
dgv4318n54 CNV gain 21841781
dgv4417n54 CNV loss 21841781
dgv4425n54 CNV gain 21841781
dgv708e212 CNV loss 25503493
dgv709e212 CNV gain 25503493
esv24159 CNV gain+loss 19812545
esv2474417 CNV loss 19546169
esv2751526 CNV loss 17911159
esv2760022 CNV gain+loss 17122850
esv28050 CNV gain+loss 19812545
esv3569265 CNV gain 25503493
esv3584688 CNV loss 24956385
esv3892626 CNV gain+loss 25118596
nsv1035969 CNV loss 25217958
nsv1040546 CNV gain 25217958
nsv1041383 CNV loss 25217958
nsv1049195 CNV gain 25217958
nsv1049226 CNV gain+loss 25217958
nsv1049639 CNV gain+loss 25217958
nsv1148560 OTHER inversion 26484159
nsv1160272 CNV duplication 26073780
nsv428300 CNV loss 18775914
nsv433429 CNV gain 18776910
nsv433430 CNV gain 18776910
nsv511042 OTHER inversion 20534489
nsv518720 CNV gain 19592680
nsv568235 CNV loss 21841781
nsv568748 CNV loss 21841781
nsv832927 CNV gain 17160897
nsv832928 CNV gain 17160897
nsv9232 CNV gain+loss 18304495
nsv974523 CNV duplication 23825009
nsv977692 CNV duplication 23825009

Variation tolerance for GOLGA8IP Gene

Gene Damage Index Score: 6.73; 78.78% of all genes are more intolerant (likely to be disease-causing)

Additional Variant Information for GOLGA8IP Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
GOLGA8IP

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for GOLGA8IP Gene

Disorders for GOLGA8IP Gene

Additional Disease Information for GOLGA8IP

No disorders were found for GOLGA8IP Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for GOLGA8IP Gene

Publications for GOLGA8IP Gene

  1. Analysis of the DNA sequence and duplication history of human chromosome 15. (PMID: 16572171) Zody MC … Nusbaum C (Nature 2006) 3 4 58
  2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. (PMID: 21873635) Gaudet P … Thomas PD (Briefings in bioinformatics 2011) 3 58
  3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 58
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58

Products for GOLGA8IP Gene

Sources for GOLGA8IP Gene

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