Aliases for GOLGA6L9 Gene

Aliases for GOLGA6L9 Gene

  • Golgin A6 Family Like 9 2 3 5
  • Golgi Autoantigen, Golgin Subfamily A, 6-Like 9 2 3
  • Golgin Subfamily A Member 6-Like Protein 9 3 4
  • Golgin A6 Family-Like 20 2 3
  • GOLGA6L20 3 4
  • Putative Golgin Subfamily A Member 6-Like Protein 20 3
  • GOLGA6L9 5

External Ids for GOLGA6L9 Gene

Previous HGNC Symbols for GOLGA6L9 Gene

  • GOLGA6L20

Previous GeneCards Identifiers for GOLGA6L9 Gene

  • GC15P080512
  • GC15P082722
  • GC15P082415

Summaries for GOLGA6L9 Gene

GeneCards Summary for GOLGA6L9 Gene

GOLGA6L9 (Golgin A6 Family Like 9) is a Protein Coding gene. An important paralog of this gene is GOLGA6L10.

Additional gene information for GOLGA6L9 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for GOLGA6L9 Gene

Genomics for GOLGA6L9 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for GOLGA6L9 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH15J082430 Enhancer 0.2 Ensembl 600.7 +0.8 837 0.4 GOLGA6L9 piR-31341-002 ENSG00000278202 RPS17
GH15J082431 Enhancer 0.2 Ensembl 600.7 +1.3 1338 0.2 GOLGA6L9 piR-31341-002 piR-51577-011 ENSG00000278202 RPS17
GH15J083204 Promoter/Enhancer 1.9 EPDnew Ensembl ENCODE CraniofacialAtlas 17.6 +777.4 777412 4.4 CREB1 HNRNPL TEAD4 PRDM10 ZNF629 ZNF512 IKZF1 KDM1A ZNF692 LARP7 HDGFL3 lnc-BNC1-2 lnc-TM6SF1-2 C15orf40 WHAMM RPL9P8 GOLGA6L9 RAMAC CSPG4P11 BTBD1
GH15J082803 Promoter/Enhancer 2.5 EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 9.8 +379.2 379249 9.8 CEBPG SP1 HNRNPL CREB1 PRDM10 ZNF629 TFE3 RFX1 LEF1 IKZF1 WHAMM FSD2 lnc-WHAMM-4 AP3B2 RAMAC SCARNA15 ENSG00000252690 EFL1 GOLGA6L9 C15orf40
GH15J083277 Promoter/Enhancer 2.4 EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 8 +854.4 854406 12.4 RNF2 CREB1 ZBTB33 ZNF692 PRDM1 RFX1 EZH2 ATF7 ZFX SP1 BNC1 LOC105370932 BTBD1 HDGFL3 GOLGA6L9 AP3B2 RAMAC HOMER2 UBE2Q2P2 ENSG00000259986
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around GOLGA6L9 on the GeneHancer Hub at the UCSC Golden Path

Cistromic (ChIP-Seq) regulation report from SPP (The Signaling Pathways Project) for GOLGA6L9

Genomic Locations for GOLGA6L9 Gene

Genomic Locations for GOLGA6L9 Gene
chr15:82,429,363-82,439,387
(GRCh38/hg38)
Size:
10,025 bases
Orientation:
Plus strand
chr15:82,722,185-82,731,587
(GRCh37/hg19)
Size:
9,403 bases
Orientation:
Plus strand

Genomic View for GOLGA6L9 Gene

Genes around GOLGA6L9 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
GOLGA6L9 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GOLGA6L9 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for GOLGA6L9 Gene

Proteins for GOLGA6L9 Gene

  • Protein details for GOLGA6L9 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    A6NEM1-GG6L9_HUMAN
    Recommended name:
    Golgin subfamily A member 6-like protein 9
    Protein Accession:
    A6NEM1
    Secondary Accessions:
    • A0A087WXJ1
    • A6NFL8
    • H0YK89
    • Q8IVV3

    Protein attributes for GOLGA6L9 Gene

    Size:
    432 amino acids
    Molecular mass:
    49193 Da
    Quaternary structure:
    No Data Available

    Alternative splice isoforms for GOLGA6L9 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for GOLGA6L9 Gene

Post-translational modifications for GOLGA6L9 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for GOLGA6L9 Gene

No data available for DME Specific Peptides for GOLGA6L9 Gene

Domains & Families for GOLGA6L9 Gene

Gene Families for GOLGA6L9 Gene

HGNC:
Human Protein Atlas (HPA):
  • Predicted intracellular proteins

Protein Domains for GOLGA6L9 Gene

InterPro:
ProtoNet:

Suggested Antigen Peptide Sequences for GOLGA6L9 Gene

GenScript: Design optimal peptide antigens:
  • Golgin subfamily A member 6-like protein 9 (GG6L9_HUMAN)

Graphical View of Domain Structure for InterPro Entry

A6NEM1

UniProtKB/Swiss-Prot:

GG6L9_HUMAN :
  • Belongs to the GOLGA6 family.
Family:
  • Belongs to the GOLGA6 family.
genes like me logo Genes that share domains with GOLGA6L9: view

Function for GOLGA6L9 Gene

Phenotypes From GWAS Catalog for GOLGA6L9 Gene

genes like me logo Genes that share phenotypes with GOLGA6L9: view

Animal Model Products

CRISPR Products

miRNA for GOLGA6L9 Gene

miRTarBase miRNAs that target GOLGA6L9

Inhibitory RNA Products

  • Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for GOLGA6L9

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for GOLGA6L9 Gene

Localization for GOLGA6L9 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for GOLGA6L9 gene
Compartment Confidence
nucleus 3
golgi apparatus 2

Gene Ontology (GO) - Cellular Components for GOLGA6L9 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005794 Golgi apparatus IEA --
genes like me logo Genes that share ontologies with GOLGA6L9: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Subcellular locations from the Human Protein Atlas (HPA) for GOLGA6L9 Gene

Pathways & Interactions for GOLGA6L9 Gene

PathCards logo

SuperPathways for GOLGA6L9 Gene

No Data Available

Interacting Proteins for GOLGA6L9 Gene

Gene Ontology (GO) - Biological Process for GOLGA6L9 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GOLGA6L9 Gene

Drugs & Compounds for GOLGA6L9 Gene

No Compound Related Data Available

Transcripts for GOLGA6L9 Gene

mRNA/cDNA for GOLGA6L9 Gene

2 REFSEQ mRNAs :
8 NCBI additional mRNA sequence :
3 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

CRISPR Products

Inhibitory RNA Products

  • Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for GOLGA6L9

Alternative Splicing Database (ASD) splice patterns (SP) for GOLGA6L9 Gene

No ASD Table

Relevant External Links for GOLGA6L9 Gene

GeneLoc Exon Structure for
GOLGA6L9

Expression for GOLGA6L9 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for GOLGA6L9 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for GOLGA6L9

genes like me logo Genes that share expression patterns with GOLGA6L9: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GOLGA6L9 Gene

Orthologs for GOLGA6L9 Gene

This gene was present in the common ancestor of chordates.

Orthologs for GOLGA6L9 Gene

Organism Taxonomy Gene Similarity Type Details
Chimpanzee
(Pan troglodytes)
Mammalia LOC744787 30
  • 97.56 (n)
-- 31
  • 90 (a)
ManyToMany
-- 31
  • 82 (a)
ManyToMany
Cow
(Bos Taurus)
Mammalia -- 31
  • 16 (a)
OneToMany
Mouse
(Mus musculus)
Mammalia Golga2 31
  • 15 (a)
OneToMany
Oppossum
(Monodelphis domestica)
Mammalia -- 31
  • 14 (a)
OneToMany
Dog
(Canis familiaris)
Mammalia -- 31
  • 14 (a)
OneToMany
Platypus
(Ornithorhynchus anatinus)
Mammalia -- 31
  • 8 (a)
OneToMany
Chicken
(Gallus gallus)
Aves -- 31
  • 12 (a)
OneToMany
Lizard
(Anolis carolinensis)
Reptilia -- 31
  • 11 (a)
OneToMany
Zebrafish
(Danio rerio)
Actinopterygii golga2 31
  • 10 (a)
OneToMany
Species where no ortholog for GOLGA6L9 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Eremothecium gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • Alpha proteobacteria (Wolbachia pipientis)
  • Amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • Baker's yeast (Saccharomyces cerevisiae)
  • Barley (Hordeum vulgare)
  • Beta proteobacteria (Neisseria meningitidis)
  • Bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • Common water flea (Daphnia pulex)
  • Corn (Zea mays)
  • E. coli (Escherichia coli)
  • Filamentous fungi (Aspergillus nidulans)
  • Firmicute Bacteria (Streptococcus pneumoniae)
  • Fission Yeast (Schizosaccharomyces pombe)
  • Fruit Fly (Drosophila melanogaster)
  • Green Algae (Chlamydomonas reinhardtii)
  • Honey Bee (Apis mellifera)
  • K. Lactis Yeast (Kluyveromyces lactis)
  • Loblloly Pine (Pinus taeda)
  • Malaria Parasite (Plasmodium falciparum)
  • Medicago Trunc (Medicago Truncatula)
  • Moss (Physcomitrella patens)
  • Orangutan (Pongo pygmaeus)
  • Pig (Sus scrofa)
  • Rainbow Trout (Oncorhynchus mykiss)
  • Rat (Rattus norvegicus)
  • Rice (Oryza sativa)
  • Rice Blast Fungus (Magnaporthe grisea)
  • Schistosome Parasite (Schistosoma mansoni)
  • Sea Anemone (Nematostella vectensis)
  • Sea Vase (Ciona intestinalis)
  • Sea Squirt (Ciona savignyi)
  • Sea Urchin (Strongylocentrotus purpuratus)
  • Sorghum (Sorghum bicolor)
  • Soybean (Glycine max)
  • Stem Rust Fungus (Puccinia graminis)
  • Sugarcane (Saccharum officinarum)
  • Thale Cress (Arabidopsis thaliana)
  • Tomato (Lycopersicon esculentum)
  • Toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • Tropical Clawed Frog (Silurana tropicalis)
  • Wheat (Triticum aestivum)
  • Worm (Caenorhabditis elegans)

Evolution for GOLGA6L9 Gene

ENSEMBL:
Gene Tree for GOLGA6L9 (if available)
TreeFam:
Gene Tree for GOLGA6L9 (if available)
Aminode:
Evolutionary constrained regions (ECRs) for GOLGA6L9: view image

Paralogs for GOLGA6L9 Gene

(19) SIMAP similar genes for GOLGA6L9 Gene using alignment to 1 proteins:

  • GG6L9_HUMAN
genes like me logo Genes that share paralogs with GOLGA6L9: view

Variants for GOLGA6L9 Gene

Additional dbSNP identifiers (rs#s) for GOLGA6L9 Gene

Structural Variations from Database of Genomic Variants (DGV) for GOLGA6L9 Gene

Variant ID Type Subtype PubMed ID
dgv1254n106 CNV deletion 24896259
esv21531 CNV gain+loss 19812545
esv22027 CNV gain+loss 19812545
esv2666932 CNV deletion 23128226
esv2668556 CNV deletion 23128226
esv999520 CNV gain 20482838
nsv1069872 CNV deletion 25765185
nsv1070718 CNV deletion 25765185
nsv1120052 OTHER inversion 24896259
nsv1136198 CNV deletion 24896259
nsv469699 CNV loss 16826518
nsv471686 CNV gain+loss 15918152
nsv9286 CNV gain+loss 18304495
nsv977744 CNV duplication 23825009
nsv977800 CNV duplication 23825009
nsv984102 CNV duplication 23825009

Additional Variant Information for GOLGA6L9 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
GOLGA6L9

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for GOLGA6L9 Gene

Disorders for GOLGA6L9 Gene

No disorders were found for GOLGA6L9 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for GOLGA6L9 Gene

Publications for GOLGA6L9 Gene

  1. A reference map of the human binary protein interactome. (PMID: 32296183) Luck K … Calderwood MA (Nature 2020) 3
  2. Analysis of the DNA sequence and duplication history of human chromosome 15. (PMID: 16572171) Zody MC … Nusbaum C (Nature 2006) 4
  3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3
  4. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard DS … MGC Project Team (Genome research 2004) 4
  5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3

Products for GOLGA6L9 Gene

Sources for GOLGA6L9 Gene