Aliases for GOLGA6L22 Gene

Aliases for GOLGA6L22 Gene

  • Golgin A6 Family Like 22 2 3 5
  • Golgin Subfamily A Member 6-Like Protein 22 3 4
  • Putative Golgin Subfamily A Member 6-Like 3
  • GOLGA6L22 5

External Ids for GOLGA6L22 Gene

Previous GeneCards Identifiers for GOLGA6L22 Gene

  • GC15M023575

Summaries for GOLGA6L22 Gene

GeneCards Summary for GOLGA6L22 Gene

GOLGA6L22 (Golgin A6 Family Like 22) is a Protein Coding gene. An important paralog of this gene is GOLGA6L6.

Additional gene information for GOLGA6L22 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for GOLGA6L22 Gene

Genomics for GOLGA6L22 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for GOLGA6L22 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH15J022494 Promoter/Enhancer 0.9 Ensembl ENCODE 0.3 +36.5 36498 3.6 IKZF1 IKZF2 ZNF341 MGA SP2 ZBTB26 ZNF205 SAP130 NR2F1 MNT HERC2P2 LOC283683 lnc-GOLGA6L22-3 GOLGA6L22 NIPA1
GH15J022663 Promoter/Enhancer 1.5 Ensembl ENCODE CraniofacialAtlas 0.1 +206.2 206198 3 GATAD2A BACH1 LARP7 PRDM1 ZNF143 ZIC2 RXRB IRF2 EZH2 ZNF600 WHAMMP3 lnc-NIPA1-1 RF00017-1705 NIPA1 LOC283683 GOLGA6L22
GH15J022757 Promoter/Enhancer 1.7 EPDnew Ensembl ENCODE CraniofacialAtlas 0.1 +299.4 299398 2.2 PHF21A GABPA MGA RNF2 ZNF316 TFDP1 RFX5 IKZF1 GABPB1 ZNF18 NIPA1 ENSG00000277755 ENSG00000274253 LOC100132817 lnc-CYFIP1-4 lnc-CYFIP1-5 LOC283683 GOLGA6L22
GH15J022420 Enhancer 0.3 Ensembl 0.3 -38.2 -38202 0.2 GLIS1 piR-57607-002 piR-35729-023 GOLGA6L22 LOC107983983
GH15J022238 Enhancer 1 Ensembl ENCODE dbSUPER 0.1 -219.8 -219838 2.7 CREB1 BRCA1 CTBP1 CEBPB CHD2 JUN RCOR1 E2F1 E2F6 PKNOX1 lnc-POTEB-4 piR-42254-001 LOC101928039 LOC107983983 GOLGA6L22
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around GOLGA6L22 on the GeneHancer Hub at the UCSC Golden Path

Cistromic (ChIP-Seq) regulation report from SPP (The Signaling Pathways Project) for GOLGA6L22

Genomic Locations for GOLGA6L22 Gene

Genomic Locations for GOLGA6L22 Gene
chr15:22,458,903-22,469,230
(GRCh38/hg38)
Size:
10,328 bases
Orientation:
Plus strand
chr15:23,571,869-23,586,995
(GRCh37/hg19)
Size:
15,127 bases
Orientation:
Minus strand

Genomic View for GOLGA6L22 Gene

Genes around GOLGA6L22 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
GOLGA6L22 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GOLGA6L22 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for GOLGA6L22 Gene

Proteins for GOLGA6L22 Gene

  • Protein details for GOLGA6L22 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    H0YM25-GG6LV_HUMAN
    Recommended name:
    Golgin subfamily A member 6-like protein 22
    Protein Accession:
    H0YM25
    Secondary Accessions:
    • A0A087X0V3

    Protein attributes for GOLGA6L22 Gene

    Size:
    810 amino acids
    Molecular mass:
    102665 Da
    Quaternary structure:
    No Data Available

neXtProt entry for GOLGA6L22 Gene

Post-translational modifications for GOLGA6L22 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for GOLGA6L22 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for GOLGA6L22 Gene

Domains & Families for GOLGA6L22 Gene

Gene Families for GOLGA6L22 Gene

HGNC:
Human Protein Atlas (HPA):
  • Predicted intracellular proteins

Protein Domains for GOLGA6L22 Gene

InterPro:
ProtoNet:

Graphical View of Domain Structure for InterPro Entry

H0YM25

UniProtKB/Swiss-Prot:

GG6LV_HUMAN :
  • Belongs to the GOLGA6 family.
Family:
  • Belongs to the GOLGA6 family.
genes like me logo Genes that share domains with GOLGA6L22: view

No data available for Suggested Antigen Peptide Sequences for GOLGA6L22 Gene

Function for GOLGA6L22 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GOLGA6L22 Gene

Localization for GOLGA6L22 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for GOLGA6L22 Gene

Pathways & Interactions for GOLGA6L22 Gene

PathCards logo

SuperPathways for GOLGA6L22 Gene

No Data Available

Interacting Proteins for GOLGA6L22 Gene

Gene Ontology (GO) - Biological Process for GOLGA6L22 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GOLGA6L22 Gene

Drugs & Compounds for GOLGA6L22 Gene

No Compound Related Data Available

Transcripts for GOLGA6L22 Gene

mRNA/cDNA for GOLGA6L22 Gene

1 REFSEQ mRNAs :
2 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Inhibitory RNA Products

  • Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for GOLGA6L22

Alternative Splicing Database (ASD) splice patterns (SP) for GOLGA6L22 Gene

No ASD Table

Relevant External Links for GOLGA6L22 Gene

GeneLoc Exon Structure for
GOLGA6L22

Expression for GOLGA6L22 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for GOLGA6L22

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GOLGA6L22 Gene

Orthologs for GOLGA6L22 Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for GOLGA6L22 Gene

Organism Taxonomy Gene Similarity Type Details
Chimpanzee
(Pan troglodytes)
Mammalia GOLGA6L1 30
  • 96.8 (n)
Species where no ortholog for GOLGA6L22 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Eremothecium gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • Alpha proteobacteria (Wolbachia pipientis)
  • Amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • Baker's yeast (Saccharomyces cerevisiae)
  • Barley (Hordeum vulgare)
  • Beta proteobacteria (Neisseria meningitidis)
  • Bread mold (Neurospora crassa)
  • Chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • Common water flea (Daphnia pulex)
  • Corn (Zea mays)
  • Cow (Bos Taurus)
  • Dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • Filamentous fungi (Aspergillus nidulans)
  • Firmicute Bacteria (Streptococcus pneumoniae)
  • Fission Yeast (Schizosaccharomyces pombe)
  • Fruit Fly (Drosophila melanogaster)
  • Green Algae (Chlamydomonas reinhardtii)
  • Honey Bee (Apis mellifera)
  • K. Lactis Yeast (Kluyveromyces lactis)
  • Lizard (Anolis carolinensis)
  • Loblloly Pine (Pinus taeda)
  • Malaria Parasite (Plasmodium falciparum)
  • Medicago Trunc (Medicago Truncatula)
  • Moss (Physcomitrella patens)
  • Mouse (Mus musculus)
  • Oppossum (Monodelphis domestica)
  • Orangutan (Pongo pygmaeus)
  • Pig (Sus scrofa)
  • Platypus (Ornithorhynchus anatinus)
  • Rainbow Trout (Oncorhynchus mykiss)
  • Rat (Rattus norvegicus)
  • Rice (Oryza sativa)
  • Rice Blast Fungus (Magnaporthe grisea)
  • Schistosome Parasite (Schistosoma mansoni)
  • Sea Anemone (Nematostella vectensis)
  • Sea Vase (Ciona intestinalis)
  • Sea Squirt (Ciona savignyi)
  • Sea Urchin (Strongylocentrotus purpuratus)
  • Sorghum (Sorghum bicolor)
  • Soybean (Glycine max)
  • Stem Rust Fungus (Puccinia graminis)
  • Sugarcane (Saccharum officinarum)
  • Thale Cress (Arabidopsis thaliana)
  • Tomato (Lycopersicon esculentum)
  • Toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • Tropical Clawed Frog (Silurana tropicalis)
  • Wheat (Triticum aestivum)
  • Worm (Caenorhabditis elegans)
  • Zebrafish (Danio rerio)

Evolution for GOLGA6L22 Gene

ENSEMBL:
Gene Tree for GOLGA6L22 (if available)
TreeFam:
Gene Tree for GOLGA6L22 (if available)

Paralogs for GOLGA6L22 Gene

genes like me logo Genes that share paralogs with GOLGA6L22: view

Variants for GOLGA6L22 Gene

Additional dbSNP identifiers (rs#s) for GOLGA6L22 Gene

Structural Variations from Database of Genomic Variants (DGV) for GOLGA6L22 Gene

Variant ID Type Subtype PubMed ID
dgv2403n100 CNV gain 25217958
dgv2404n100 CNV gain 25217958
dgv2405n100 CNV gain+loss 25217958
dgv2406n100 CNV gain 25217958
dgv2407n100 CNV gain+loss 25217958
dgv2408n100 CNV loss 25217958
dgv4314n54 CNV loss 21841781
dgv4315n54 CNV loss 21841781
dgv4316n54 CNV loss 21841781
dgv4331n54 CNV loss 21841781
esv2474417 CNV loss 19546169
esv24908 CNV gain+loss 19812545
esv3357348 CNV duplication 20981092
esv3892623 CNV gain 25118596
esv3892626 CNV gain+loss 25118596
nsv1036020 CNV loss 25217958
nsv1042668 CNV loss 25217958
nsv1075481 CNV duplication 25765185
nsv1075889 CNV duplication 25765185
nsv1075890 CNV duplication 25765185
nsv1075892 CNV duplication 25765185
nsv1075893 CNV duplication 25765185
nsv1077801 CNV duplication 25765185
nsv1118552 CNV duplication 24896259
nsv1141254 CNV duplication 24896259
nsv1141255 CNV duplication 24896259
nsv1141257 CNV duplication 24896259
nsv1148323 CNV duplication 26484159
nsv433429 CNV gain 18776910
nsv442359 CNV gain+loss 18776908
nsv471379 CNV gain 19718026
nsv482175 CNV gain 20164927
nsv511042 OTHER inversion 20534489
nsv568221 CNV loss 21841781
nsv832930 CNV loss 17160897
nsv9181 CNV gain+loss 18304495
nsv952564 CNV duplication 24416366
nsv952568 CNV deletion 24416366
nsv976884 CNV duplication 23825009
nsv976888 CNV duplication 23825009
nsv984015 CNV duplication 23825009
nsv984019 CNV duplication 23825009
nsv984130 CNV duplication 23825009

Additional Variant Information for GOLGA6L22 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
GOLGA6L22

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for GOLGA6L22 Gene

Disorders for GOLGA6L22 Gene

No disorders were found for GOLGA6L22 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for GOLGA6L22 Gene

Publications for GOLGA6L22 Gene

  1. Analysis of the DNA sequence and duplication history of human chromosome 15. (PMID: 16572171) Zody MC … Nusbaum C (Nature 2006) 3 4
  2. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3

Products for GOLGA6L22 Gene

Sources for GOLGA6L22 Gene