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Aliases for GOLGA2P7 Gene

Aliases for GOLGA2P7 Gene

  • GOLGA2 Pseudogene 7 2 3 5
  • Golgin A2 Pseudogene 7 2 3

External Ids for GOLGA2P7 Gene

Previous GeneCards Identifiers for GOLGA2P7 Gene

  • GC15M084889

Summaries for GOLGA2P7 Gene

GeneCards Summary for GOLGA2P7 Gene

GOLGA2P7 (GOLGA2 Pseudogene 7) is a Pseudogene.

Additional gene information for GOLGA2P7 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for GOLGA2P7 Gene

Genomics for GOLGA2P7 Gene

GeneHancer (GH) Regulatory Elements for GOLGA2P7 Gene

Promoters and enhancers for GOLGA2P7 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH15J084229 Promoter 0.5 Ensembl 600.7 +0.4 367 2.4 GOLGA2P7 CSPG4P11 LOC105376724
GH15J083446 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE dbSUPER 7 +782.7 782653 2.2 CC2D1A ZNF121 ZSCAN21 SP7 ZNF548 KLF14 EGR1 SMARCA4 CREB1 GLIS2 SH3GL3 WHAMM C15orf40 GOLGA6L4 RAMAC SNHG21 ENSG00000259774 CSPG4P11 GOLGA2P7 GC15M083457
GH15J084907 Enhancer 1.8 FANTOM5 Ensembl ENCODE dbSUPER 6.1 -682.1 -682094 8.7 ZNF652 ZFX ELF3 POLR2A MLLT1 CEBPG ZNF384 NFIB ZSCAN21 NCOA3 GOLGA6L3 GOLGA2P7 CSPG4P11 UBE2Q2L ENSG00000259683 ENSG00000259774 GOLGA6L4 LINC00933 SLC28A1 GC15M084891
GH15J083692 Promoter/Enhancer 1 Ensembl ENCODE 6.9 +536.1 536079 2.7 SP1 HES1 ZNF207 NONO HNF4A SCAND2P WDR73 WHAMM GOLGA6L4 RNU6-401P UBE2Q2P1 GOLGA6L5P C15orf40 GOLGA2P7 ADAMTSL3
GH15J085021 Enhancer 1.3 Ensembl ENCODE dbSUPER 4.4 -797.9 -797860 14.1 ELF3 CBFA2T2 ZNF384 SP1 HNF1A PRDM1 MLLT1 SMARCA4 IKZF1 GMEB1 ENSG00000229212 ENSG00000200991 ALPK3 ADAMTS7P4 CSPG4P11 ZNF592 ENSG00000259630 GOLGA2P7 GC15P085023 PDE8A
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around GOLGA2P7 on UCSC Golden Path with GeneCards custom track

Genomic Locations for GOLGA2P7 Gene

Genomic Locations for GOLGA2P7 Gene
chr15:84,198,848-84,230,168
(GRCh38/hg38)
Size:
31,321 bases
Orientation:
Minus strand
chr15:84,867,600-84,898,920
(GRCh37/hg19)
Size:
31,321 bases
Orientation:
Minus strand

Genomic View for GOLGA2P7 Gene

Genes around GOLGA2P7 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
GOLGA2P7 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GOLGA2P7 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for GOLGA2P7 Gene

Proteins for GOLGA2P7 Gene

Post-translational modifications for GOLGA2P7 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GOLGA2P7 Gene

Domains & Families for GOLGA2P7 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GOLGA2P7 Gene

Function for GOLGA2P7 Gene

Phenotypes From GWAS Catalog for GOLGA2P7 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GOLGA2P7 Gene

Localization for GOLGA2P7 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for GOLGA2P7 Gene

Pathways & Interactions for GOLGA2P7 Gene

PathCards logo

SuperPathways for GOLGA2P7 Gene

No Data Available

Interacting Proteins for GOLGA2P7 Gene

Gene Ontology (GO) - Biological Process for GOLGA2P7 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GOLGA2P7 Gene

Drugs & Compounds for GOLGA2P7 Gene

No Compound Related Data Available

Transcripts for GOLGA2P7 Gene

mRNA/cDNA for GOLGA2P7 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for GOLGA2P7 Gene

No ASD Table

Relevant External Links for GOLGA2P7 Gene

GeneLoc Exon Structure for
GOLGA2P7
ECgene alternative splicing isoforms for
GOLGA2P7

Expression for GOLGA2P7 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for GOLGA2P7 Gene

mRNA differential expression in normal tissues according to GTEx for GOLGA2P7 Gene

This gene is overexpressed in Esophagus - Mucosa (x4.5).

NURSA nuclear receptor signaling pathways regulating expression of GOLGA2P7 Gene:

GOLGA2P7
genes like me logo Genes that share expression patterns with GOLGA2P7: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GOLGA2P7 Gene

Orthologs for GOLGA2P7 Gene

Evolution for GOLGA2P7 Gene

ENSEMBL:
Gene Tree for GOLGA2P7 (if available)
TreeFam:
Gene Tree for GOLGA2P7 (if available)

No data available for Orthologs for GOLGA2P7 Gene

Paralogs for GOLGA2P7 Gene

No data available for Paralogs for GOLGA2P7 Gene

Variants for GOLGA2P7 Gene

Sequence variations from dbSNP and Humsavar for GOLGA2P7 Gene

SNP ID Clin Chr 15 pos Variation AA Info Type
rs1003475571 -- 84,217,634(-) A/T intron_variant
rs1003508254 -- 84,225,573(-) C/T intron_variant
rs1005555603 -- 84,212,719(-) C/T intron_variant
rs1007701419 -- 84,227,841(-) C/G intron_variant
rs1008147338 -- 84,231,242(-) A/G upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for GOLGA2P7 Gene

Variant ID Type Subtype PubMed ID
dgv2638n100 CNV gain 25217958
dgv2639n100 CNV loss 25217958
dgv2640n100 CNV gain 25217958
dgv2641n100 CNV loss 25217958
dgv2642n100 CNV gain+loss 25217958
dgv752e212 CNV loss 25503493
esv2672879 CNV deletion 23128226
esv2760048 CNV gain+loss 17122850
esv2761880 CNV gain 21179565
esv29092 CNV gain+loss 19812545
esv3326972 CNV duplication 20981092
esv3329086 CNV duplication 20981092
esv3569809 CNV gain 25503493
nsv1037229 CNV gain+loss 25217958
nsv1038297 CNV gain+loss 25217958
nsv1076413 CNV duplication 25765185
nsv1077809 CNV duplication 25765185
nsv1077810 CNV duplication 25765185
nsv1078385 CNV duplication 25765185
nsv1129329 OTHER inversion 24896259
nsv1132413 CNV duplication 24896259
nsv1132414 CNV duplication 24896259
nsv1141271 CNV duplication 24896259
nsv1147123 CNV duplication 26484159
nsv1151235 CNV duplication 26484159
nsv428310 CNV gain+loss 18775914
nsv518289 CNV loss 19592680
nsv833076 CNV loss 17160897
nsv833077 CNV gain+loss 17160897
nsv9290 CNV gain+loss 18304495
nsv952015 CNV duplication 24416366
nsv976960 CNV duplication 23825009
nsv977803 CNV duplication 23825009
nsv984148 CNV duplication 23825009

Additional Variant Information for GOLGA2P7 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
GOLGA2P7

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for GOLGA2P7 Gene

Disorders for GOLGA2P7 Gene

Additional Disease Information for GOLGA2P7

No disorders were found for GOLGA2P7 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for GOLGA2P7 Gene

Publications for GOLGA2P7 Gene

  1. RNA-binding activity of TRIM25 is mediated by its PRY/SPRY domain and is required for ubiquitination. (PMID: 29117863) Choudhury NR … Michlewski G (BMC biology 2017) 3 58
  2. A germline-specific class of small RNAs binds mammalian Piwi proteins. (PMID: 16751776) Girard A … Carmell MA (Nature 2006) 3 58
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58

Products for GOLGA2P7 Gene

Sources for GOLGA2P7 Gene

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