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Aliases for GOLGA2P6 Gene

Aliases for GOLGA2P6 Gene

  • GOLGA2 Pseudogene 6 2 3 5
  • Golgin A2 Pseudogene 6 2 3
  • Golgi Autoantigen, Golgin Subfamily A, 6 Pseudogene 3
  • Golgin A6 Family, Member A Pseudogene 3

External Ids for GOLGA2P6 Gene

Previous GeneCards Identifiers for GOLGA2P6 Gene

  • GC10M030670

Summaries for GOLGA2P6 Gene

GeneCards Summary for GOLGA2P6 Gene

GOLGA2P6 (GOLGA2 Pseudogene 6) is a Pseudogene.

Additional gene information for GOLGA2P6 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for GOLGA2P6 Gene

Genomics for GOLGA2P6 Gene

GeneHancer (GH) Regulatory Elements for GOLGA2P6 Gene

Promoters and enhancers for GOLGA2P6 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH10J030374 Enhancer 1 Ensembl ENCODE 600.7 +1.0 1040 3.1 GLIS2 ZNF600 PRDM10 PKNOX1 ZNF629 POLR2A ZBTB20 ZSCAN5C OSR2 USF1 MTPAP GOLGA2P6 MIR7162
GH10J030376 Enhancer 0.3 Ensembl 600.7 -1.9 -1915 0.2 CEBPB GOLGA2P6 MTPAP MAP3K8 NIFKP1
GH10J030365 Enhancer 0.6 ENCODE 0.4 +9.0 8959 0.2 NCOA3 FOSL2 CREB1 CTBP1 ESRRA ZNF217 DPF2 GATAD2B MAZ FOS RN7SL241P PIR37599 GC10P030368 GC10P030366 GC10M030367 GOLGA2P6 MTPAP
GH10J030366 Enhancer 0.5 Ensembl 0.4 +6.8 6785 2.4 FOSL1 GABPB1 ZNF664 NFATC3 JUN SMARCA5 GC10M030367 GC10P030367 RN7SL241P MIR7162 MTPAP GOLGA2P6
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around GOLGA2P6 on UCSC Golden Path with GeneCards custom track

Genomic Locations for GOLGA2P6 Gene

Genomic Locations for GOLGA2P6 Gene
chr10:30,364,327-30,374,386
(GRCh38/hg38)
Size:
10,060 bases
Orientation:
Minus strand
chr10:30,653,256-30,663,377
(GRCh37/hg19)
Size:
10,122 bases
Orientation:
Minus strand

Genomic View for GOLGA2P6 Gene

Genes around GOLGA2P6 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
GOLGA2P6 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GOLGA2P6 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for GOLGA2P6 Gene

Proteins for GOLGA2P6 Gene

Post-translational modifications for GOLGA2P6 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GOLGA2P6 Gene

Domains & Families for GOLGA2P6 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GOLGA2P6 Gene

Function for GOLGA2P6 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GOLGA2P6 Gene

Localization for GOLGA2P6 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for GOLGA2P6 Gene

Pathways & Interactions for GOLGA2P6 Gene

PathCards logo

SuperPathways for GOLGA2P6 Gene

No Data Available

Interacting Proteins for GOLGA2P6 Gene

Gene Ontology (GO) - Biological Process for GOLGA2P6 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GOLGA2P6 Gene

Drugs & Compounds for GOLGA2P6 Gene

No Compound Related Data Available

Transcripts for GOLGA2P6 Gene

mRNA/cDNA for GOLGA2P6 Gene

(3) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for GOLGA2P6 Gene

No ASD Table

Relevant External Links for GOLGA2P6 Gene

GeneLoc Exon Structure for
GOLGA2P6
ECgene alternative splicing isoforms for
GOLGA2P6

Expression for GOLGA2P6 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for GOLGA2P6 Gene

mRNA differential expression in normal tissues according to GTEx for GOLGA2P6 Gene

This gene is overexpressed in Testis (x48.7).

NURSA nuclear receptor signaling pathways regulating expression of GOLGA2P6 Gene:

GOLGA2P6
genes like me logo Genes that share expression patterns with GOLGA2P6: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GOLGA2P6 Gene

Orthologs for GOLGA2P6 Gene

Evolution for GOLGA2P6 Gene

ENSEMBL:
Gene Tree for GOLGA2P6 (if available)
TreeFam:
Gene Tree for GOLGA2P6 (if available)

No data available for Orthologs for GOLGA2P6 Gene

Paralogs for GOLGA2P6 Gene

No data available for Paralogs for GOLGA2P6 Gene

Variants for GOLGA2P6 Gene

Sequence variations from dbSNP and Humsavar for GOLGA2P6 Gene

SNP ID Clin Chr 10 pos Variation AA Info Type
rs1000159984 -- 30,369,589(-) G/A non_coding_transcript_variant
rs1000249873 -- 30,364,791(-) G/A non_coding_transcript_variant
rs1000627374 -- 30,368,327(-) C/T non_coding_transcript_variant
rs1000696019 -- 30,364,534(-) T/G non_coding_transcript_variant
rs1000765417 -- 30,370,678(-) G/A/T intron_variant

Structural Variations from Database of Genomic Variants (DGV) for GOLGA2P6 Gene

Variant ID Type Subtype PubMed ID
nsv1129323 OTHER inversion 24896259
nsv1161936 CNV duplication 26073780
nsv507546 OTHER sequence alteration 20534489
nsv509349 CNV insertion 20534489
nsv831821 CNV loss 17160897
nsv947808 CNV duplication 23825009

Additional Variant Information for GOLGA2P6 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
GOLGA2P6

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for GOLGA2P6 Gene

Disorders for GOLGA2P6 Gene

Additional Disease Information for GOLGA2P6

No disorders were found for GOLGA2P6 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for GOLGA2P6 Gene

Publications for GOLGA2P6 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 58

Products for GOLGA2P6 Gene

Sources for GOLGA2P6 Gene

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