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Aliases for GOLGA2P5 Gene

Aliases for GOLGA2P5 Gene

  • GOLGA2 Pseudogene 5 2 3 5
  • Golgi Autoantigen, Golgin Subfamily A, 2-Like 1 2 3
  • Golgin A2 Family, Member B 2 3
  • Golgin A2 Pseudogene 5 2 3
  • Golgin A2-Like 1 2 3
  • GOLGA2L1 3 4
  • GOLGA2B 3 4
  • Golgin Subfamily A Member 2-Like Protein 1 4
  • Putative Golgin Subfamily A Member 2B 4
  • Golgin Subfamily A Member 2B 3

External Ids for GOLGA2P5 Gene

Previous HGNC Symbols for GOLGA2P5 Gene

  • GOLGA2L1
  • GOLGA2B

Previous GeneCards Identifiers for GOLGA2P5 Gene

  • GC12M100557
  • GC12M100595
  • GC12M100640
  • GC12M100702
  • GC12M100743

Summaries for GOLGA2P5 Gene

GeneCards Summary for GOLGA2P5 Gene

GOLGA2P5 (GOLGA2 Pseudogene 5) is a Pseudogene.

Additional gene information for GOLGA2P5 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for GOLGA2P5 Gene

Genomics for GOLGA2P5 Gene

GeneHancer (GH) Regulatory Elements for GOLGA2P5 Gene

Promoters and enhancers for GOLGA2P5 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH12J100198 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 13.3 -27.2 -27207 4.9 ZFX ELF3 MNT NKRF POLR2A MLLT1 ZNF121 CEBPG RERE CSDE1 ACTR6 ENSG00000257489 SCYL2 GOLGA2P5 ANKS1B GC12M100506
GH12J100572 Promoter/Enhancer 2 EPDnew Ensembl ENCODE 9.7 -401.5 -401466 4.7 SP1 ELF3 MNT NKRF POLR2A ZNF687 ZSCAN21 TFE3 ZBTB7A SP7 GAS2L3 SCYL2 UTP20 GOLGA2P5 PIGAP1
GH12J100163 Promoter/Enhancer 1.3 Ensembl ENCODE 12.5 +9.6 9610 1.2 MYC SP1 PKNOX1 NRF1 ZNF600 PRDM10 ZIC2 ZNF143 CTCF PATZ1 PIR55599 PIR56508 PIR48175 PIR42520 PIR50984 PIR55619 PIR50064 GC12M100502 GOLGA2P5 ACTR6
GH12J100141 Promoter/Enhancer 2 EPDnew Ensembl ENCODE 6.9 +31.3 31258 2.8 CC2D1A ZFX MNT ZNF148 NKRF ZNF121 POLR2A GTF2F1 CSDE1 ZSCAN21 UHRF1BP1L ENSG00000257696 GOLGA2P5 GC12P100116
GH12J100127 Enhancer 0.8 ENCODE 10.8 +45.2 45225 1.7 CTCF ELF3 CEBPG ZSCAN21 TRIM24 SP1 PPARG PRDM1 MZF1 RXRA GOLGA2P5 ACTR6 UHRF1BP1L GC12P100116
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around GOLGA2P5 on UCSC Golden Path with GeneCards custom track

Genomic Locations for GOLGA2P5 Gene

Genomic Locations for GOLGA2P5 Gene
chr12:100,156,357-100,173,659
(GRCh38/hg38)
Size:
17,303 bases
Orientation:
Minus strand
chr12:100,550,135-100,567,437
(GRCh37/hg19)
Size:
17,303 bases
Orientation:
Minus strand

Genomic View for GOLGA2P5 Gene

Genes around GOLGA2P5 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
GOLGA2P5 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GOLGA2P5 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for GOLGA2P5 Gene

Proteins for GOLGA2P5 Gene

  • Protein details for GOLGA2P5 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q9HBQ8-GGA2B_HUMAN
    Recommended name:
    Putative golgin subfamily A member 2B
    Protein Accession:
    Q9HBQ8
    Secondary Accessions:
    • Q9NSV2

    Protein attributes for GOLGA2P5 Gene

    Size:
    144 amino acids
    Molecular mass:
    15482 Da
    Quaternary structure:
    No Data Available
    SequenceCaution:
    • Sequence=CAB70892.1; Type=Erroneous initiation; Note=Translation N-terminally shortened.; Evidence={ECO:0000305};

    Alternative splice isoforms for GOLGA2P5 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for GOLGA2P5 Gene

Post-translational modifications for GOLGA2P5 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GOLGA2P5 Gene

Domains & Families for GOLGA2P5 Gene

Protein Domains for GOLGA2P5 Gene

InterPro:
ProtoNet:

Suggested Antigen Peptide Sequences for GOLGA2P5 Gene

GenScript: Design optimal peptide antigens:
  • Golgin subfamily A member 2-like protein 1 (GGA2B_HUMAN)
  • GOLGA2L1 protein (Q32LX7_HUMAN)

Graphical View of Domain Structure for InterPro Entry

Q9HBQ8

UniProtKB/Swiss-Prot:

GGA2B_HUMAN :
  • Belongs to the GOLGA2 family.
Family:
  • Belongs to the GOLGA2 family.
genes like me logo Genes that share domains with GOLGA2P5: view

No data available for Gene Families for GOLGA2P5 Gene

Function for GOLGA2P5 Gene

Phenotypes From GWAS Catalog for GOLGA2P5 Gene

genes like me logo Genes that share phenotypes with GOLGA2P5: view

Animal Model Products

CRISPR Products

miRNA for GOLGA2P5 Gene

miRTarBase miRNAs that target GOLGA2P5

Clone Products

  • Applied Biological Materials (abm): Clones for GOLGA2P5 - Now 50% OFF >
  • * GOLGA2P5 as ready-to-use vector or virus: ORF | Lenti- | Retro- | Adeno- | AAV- | Protein Vector - Browse All
  • * GOLGA2P5 tags and reporters available: His, HA, Myc, Flag, GFP, RFP, Luciferase - Browse All

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for GOLGA2P5 Gene

Localization for GOLGA2P5 Gene

Gene Ontology (GO) - Cellular Components for GOLGA2P5 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005794 Golgi apparatus IEA --
genes like me logo Genes that share ontologies with GOLGA2P5: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Subcellular locations from the Human Protein Atlas (HPA) for GOLGA2P5 Gene

Pathways & Interactions for GOLGA2P5 Gene

PathCards logo

SuperPathways for GOLGA2P5 Gene

No Data Available

Interacting Proteins for GOLGA2P5 Gene

Gene Ontology (GO) - Biological Process for GOLGA2P5 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GOLGA2P5 Gene

Drugs & Compounds for GOLGA2P5 Gene

No Compound Related Data Available

Transcripts for GOLGA2P5 Gene

mRNA/cDNA for GOLGA2P5 Gene

Unigene Clusters for GOLGA2P5 Gene

Golgin A2 pseudogene 5:
Representative Sequences:

CRISPR Products

Clone Products

  • Applied Biological Materials (abm): Clones for GOLGA2P5 - Now 50% OFF >
  • * GOLGA2P5 as ready-to-use vector or virus: ORF | Lenti- | Retro- | Adeno- | AAV- | Protein Vector - Browse All
  • * GOLGA2P5 tags and reporters available: His, HA, Myc, Flag, GFP, RFP, Luciferase - Browse All

Alternative Splicing Database (ASD) splice patterns (SP) for GOLGA2P5 Gene

No ASD Table

Relevant External Links for GOLGA2P5 Gene

GeneLoc Exon Structure for
GOLGA2P5
ECgene alternative splicing isoforms for
GOLGA2P5

Expression for GOLGA2P5 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for GOLGA2P5 Gene

NURSA nuclear receptor signaling pathways regulating expression of GOLGA2P5 Gene:

GOLGA2P5

SOURCE GeneReport for Unigene cluster for GOLGA2P5 Gene:

Hs.524660
genes like me logo Genes that share expression patterns with GOLGA2P5: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GOLGA2P5 Gene

Orthologs for GOLGA2P5 Gene

Evolution for GOLGA2P5 Gene

ENSEMBL:
Gene Tree for GOLGA2P5 (if available)
TreeFam:
Gene Tree for GOLGA2P5 (if available)

No data available for Orthologs for GOLGA2P5 Gene

Paralogs for GOLGA2P5 Gene

(2) SIMAP similar genes for GOLGA2P5 Gene using alignment to 1 proteins:

  • GGA2B_HUMAN
genes like me logo Genes that share paralogs with GOLGA2P5: view

No data available for Paralogs for GOLGA2P5 Gene

Variants for GOLGA2P5 Gene

Sequence variations from dbSNP and Humsavar for GOLGA2P5 Gene

SNP ID Clin Chr 12 pos Variation AA Info Type
rs1000146142 -- 100,158,962(-) G/A genic_downstream_transcript_variant, non_coding_transcript_variant
rs1000184572 -- 100,173,188(-) C/A/G non_coding_transcript_variant
rs1000362028 -- 100,169,002(-) T/C intron_variant, non_coding_transcript_variant
rs1000833754 -- 100,169,400(-) C/T intron_variant
rs1001723533 -- 100,175,181(-) C/T upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for GOLGA2P5 Gene

Variant ID Type Subtype PubMed ID
esv3630549 CNV loss 21293372
esv3892256 CNV loss 25118596
nsv1048784 CNV gain 25217958
nsv559964 CNV gain 21841781
nsv973107 CNV duplication 23825009

Additional Variant Information for GOLGA2P5 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
GOLGA2P5

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for GOLGA2P5 Gene

Disorders for GOLGA2P5 Gene

Additional Disease Information for GOLGA2P5

No disorders were found for GOLGA2P5 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for GOLGA2P5 Gene

Publications for GOLGA2P5 Gene

  1. A synthetic interaction screen identifies factors selectively required for proliferation and TERT transcription in p53-deficient human cancer cells. (PMID: 23284306) Xie L … Green MR (PLoS genetics 2012) 3 58
  2. The full-ORF clone resource of the German cDNA Consortium. (PMID: 17974005) Bechtel S … Schupp I (BMC genomics 2007) 4 58
  3. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 58
  4. A germline-specific class of small RNAs binds mammalian Piwi proteins. (PMID: 16751776) Girard A … Carmell MA (Nature 2006) 3 58
  5. The finished DNA sequence of human chromosome 12. (PMID: 16541075) Scherer SE … Baylor College of Medicine Human Genome Sequencing Center Sequence Production Team (Nature 2006) 4 58

Products for GOLGA2P5 Gene

Sources for GOLGA2P5 Gene

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