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Aliases for GOLGA2P10 Gene

Aliases for GOLGA2P10 Gene

  • GOLGA2 Pseudogene 10 2 3 5
  • Antigen SK1, Colon Cancer-Associated 2 3
  • Golgin A2 Pseudogene 10 2 3
  • Golgin Subfamily A Member 2-Like 3

External Ids for GOLGA2P10 Gene

Summaries for GOLGA2P10 Gene

GeneCards Summary for GOLGA2P10 Gene

GOLGA2P10 (GOLGA2 Pseudogene 10) is a Pseudogene.

Additional gene information for GOLGA2P10 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for GOLGA2P10 Gene

Genomics for GOLGA2P10 Gene

GeneHancer (GH) Regulatory Elements for GOLGA2P10 Gene

Promoters and enhancers for GOLGA2P10 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH15J082512 Promoter 0.5 Ensembl 600.7 +0.6 598 2.8 GOLGA2P10 GC15M082643
GH15J082515 Enhancer 0.2 Ensembl 600.7 -1.9 -1902 0.2 GOLGA2P10 GOLGA6L17P
GH15J082127 Enhancer 1.1 Ensembl ENCODE dbSUPER 6.4 +383.0 383021 6.2 SP1 CEBPG POLR2A PKNOX1 RXRA FOXA2 JUND RUNX3 FOS YY1 SAXO2 EFL1 CSPG4P10 MEX3B GOLGA6L9 GOLGA2P10 AP3B2 GC15P082150 GC15P082104
GH15J082112 Enhancer 0.4 Ensembl dbSUPER 5.4 +401.0 400998 1.2 CSPG4P10 GOLGA2P10 GOLGA6L9 GC15P082104 GC15P082150
GH15J082505 Enhancer 0.2 Ensembl 0.4 +7.6 7599 3.6 GC15M082643 GOLGA2P10 PIRC72
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around GOLGA2P10 on UCSC Golden Path with GeneCards custom track

Genomic Locations for GOLGA2P10 Gene

Genomic Locations for GOLGA2P10 Gene
chr15:82,471,477-82,513,999
(GRCh38/hg38)
Size:
42,523 bases
Orientation:
Minus strand
chr15:82,764,078-82,798,323
(GRCh37/hg19)
Size:
34,246 bases
Orientation:
Minus strand

Genomic View for GOLGA2P10 Gene

Genes around GOLGA2P10 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
GOLGA2P10 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GOLGA2P10 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for GOLGA2P10 Gene

Proteins for GOLGA2P10 Gene

Post-translational modifications for GOLGA2P10 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GOLGA2P10 Gene

Domains & Families for GOLGA2P10 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GOLGA2P10 Gene

Function for GOLGA2P10 Gene

Phenotypes From GWAS Catalog for GOLGA2P10 Gene

Phenotypes for GOLGA2P10 Gene

genes like me logo Genes that share phenotypes with GOLGA2P10: view

Animal Model Products

CRISPR Products

Inhibitory RNA Products

  • Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for GOLGA2P10

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GOLGA2P10 Gene

Localization for GOLGA2P10 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for GOLGA2P10 Gene

Pathways & Interactions for GOLGA2P10 Gene

PathCards logo

SuperPathways for GOLGA2P10 Gene

No Data Available

Interacting Proteins for GOLGA2P10 Gene

Gene Ontology (GO) - Biological Process for GOLGA2P10 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GOLGA2P10 Gene

Drugs & Compounds for GOLGA2P10 Gene

No Compound Related Data Available

Transcripts for GOLGA2P10 Gene

mRNA/cDNA for GOLGA2P10 Gene

(1) REFSEQ mRNAs :
(15) Additional mRNA sequences :
(10) Selected AceView cDNA sequences:
(6) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

CRISPR Products

Inhibitory RNA Products

  • Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for GOLGA2P10

Alternative Splicing Database (ASD) splice patterns (SP) for GOLGA2P10 Gene

No ASD Table

Relevant External Links for GOLGA2P10 Gene

GeneLoc Exon Structure for
GOLGA2P10
ECgene alternative splicing isoforms for
GOLGA2P10

Expression for GOLGA2P10 Gene

NURSA nuclear receptor signaling pathways regulating expression of GOLGA2P10 Gene:

GOLGA2P10
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GOLGA2P10 Gene

Orthologs for GOLGA2P10 Gene

Evolution for GOLGA2P10 Gene

ENSEMBL:
Gene Tree for GOLGA2P10 (if available)
TreeFam:
Gene Tree for GOLGA2P10 (if available)

No data available for Orthologs for GOLGA2P10 Gene

Paralogs for GOLGA2P10 Gene

No data available for Paralogs for GOLGA2P10 Gene

Variants for GOLGA2P10 Gene

Sequence variations from dbSNP and Humsavar for GOLGA2P10 Gene

SNP ID Clin Chr 15 pos Variation AA Info Type
rs1001529361 -- 82,502,924(-) C/T intron_variant
rs1003246900 -- 82,499,567(-) A/C intron_variant
rs1003500882 -- 82,500,188(-) A/C intron_variant
rs1003610338 -- 82,498,793(-) A/G intron_variant
rs1004175424 -- 82,488,540(-) G/A intron_variant

Structural Variations from Database of Genomic Variants (DGV) for GOLGA2P10 Gene

Variant ID Type Subtype PubMed ID
dgv1255n106 CNV duplication 24896259
esv21531 CNV gain+loss 19812545
esv22027 CNV gain+loss 19812545
esv2666932 CNV deletion 23128226
esv3357630 CNV duplication 20981092
esv999520 CNV gain 20482838
nsv1035899 CNV gain 25217958
nsv1069874 CNV deletion 25765185
nsv1069875 CNV deletion 25765185
nsv1069876 CNV deletion 25765185
nsv1069878 CNV deletion 25765185
nsv1070289 CNV deletion 25765185
nsv1070719 CNV deletion 25765185
nsv1078382 CNV duplication 25765185
nsv1118327 CNV deletion 24896259
nsv1120052 OTHER inversion 24896259
nsv1121898 CNV deletion 24896259
nsv1126402 CNV deletion 24896259
nsv1136200 CNV deletion 24896259
nsv1136201 CNV deletion 24896259
nsv1153612 CNV duplication 26484159
nsv469699 CNV loss 16826518
nsv471686 CNV gain+loss 15918152
nsv483125 CNV loss 15286789
nsv570252 CNV loss 21841781
nsv833071 CNV gain 17160897
nsv9286 CNV gain+loss 18304495
nsv952011 CNV duplication 24416366
nsv952012 CNV deletion 24416366
nsv976997 CNV duplication 23825009
nsv976998 CNV duplication 23825009
nsv977744 CNV duplication 23825009
nsv977801 CNV duplication 23825009
nsv984102 CNV duplication 23825009

Additional Variant Information for GOLGA2P10 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
GOLGA2P10

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for GOLGA2P10 Gene

Disorders for GOLGA2P10 Gene

Additional Disease Information for GOLGA2P10

No disorders were found for GOLGA2P10 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for GOLGA2P10 Gene

Publications for GOLGA2P10 Gene

  1. Identification of the immunoreactive peptide sequence for AgSK1, an adenocarcinoma-restricted antigen. (PMID: 10746788) Yasutomi J … Glassy MC (Tissue antigens 2000) 2 3 58
  2. A proteome-scale map of the human interactome network. (PMID: 25416956) Rolland T … Vidal M (Cell 2014) 3 58
  3. Systematic identification of pathological lamin A interactors. (PMID: 24623722) Dittmer TA … Misteli T (Molecular biology of the cell 2014) 3 58
  4. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 58
  5. A germline-specific class of small RNAs binds mammalian Piwi proteins. (PMID: 16751776) Girard A … Carmell MA (Nature 2006) 3 58

Products for GOLGA2P10 Gene

Sources for GOLGA2P10 Gene

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