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Aliases for GNG12-AS1 Gene

Subcategory (RNA class) for GNG12-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for GNG12-AS1 Gene

  • GNG12, DIRAS3 And WLS Antisense RNA 1 2 3 5
  • GNG12 Antisense RNA 1 (Non-Protein Coding) 2 3
  • GNG12 Antisense RNA 1 2

External Ids for GNG12-AS1 Gene

Previous GeneCards Identifiers for GNG12-AS1 Gene

  • GC01P068299

Summaries for GNG12-AS1 Gene

GeneCards Summary for GNG12-AS1 Gene

GNG12-AS1 (GNG12, DIRAS3 And WLS Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for GNG12-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for GNG12-AS1 Gene

Genomics for GNG12-AS1 Gene

GeneHancer (GH) Regulatory Elements for GNG12-AS1 Gene

Promoters and enhancers for GNG12-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J067830 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE dbSUPER 600.7 +0.3 346 4.9 NKRF ZNF121 ZSCAN21 NCOA6 ZBTB7A YY1 SP7 SP1 KLF14 PRDM1 GNG12 GNG12-AS1 RNU7-80P
GH01J067785 Promoter/Enhancer 1.8 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 11.8 -42.1 -42087 10.8 MAFK ELF1 MLLT1 IKZF1 ZSCAN4 REST IKZF2 CEBPB SP1 DPF2 GNG12 GNG12-AS1 RNU6-1031P DIRAS3 RNU7-80P
GH01J067745 Enhancer 1.4 FANTOM5 ENCODE dbSUPER 10.7 -81.7 -81657 10.5 ZNF652 SP1 ELF3 ZKSCAN8 ZNF148 ZNF687 ZSCAN21 BACH1 MAFK SP7 GADD45A RNU7-80P RNU6-1031P GNG12 GNG12-AS1 LOC105378781
GH01J067534 Enhancer 1.4 FANTOM5 Ensembl ENCODE 9.7 -297.0 -296957 2.2 ZNF652 CC2D1A ELF3 CTCF ZNF121 CEBPG RERE TFE3 SP7 ZNF174 GADD45A RNU7-80P GNG12 GNG12-AS1 SLC35D1 GC01P067542 LINC01702
GH01J067887 Enhancer 1.3 FANTOM5 Ensembl ENCODE 10.6 +57.3 57303 3.6 TRIM24 SP7 PRDM1 SMARCA4 IKZF1 CREB1 DPF2 ZNF600 PRDM10 ATF1 GNG12 GNG12-AS1 DIRAS3 LOC100133029
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around GNG12-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for GNG12-AS1 Gene

Genomic Locations for GNG12-AS1 Gene
chr1:67,832,288-68,202,987
(GRCh38/hg38)
Size:
370,700 bases
Orientation:
Plus strand
chr1:68,297,971-68,668,670
(GRCh37/hg19)
Size:
370,700 bases
Orientation:
Plus strand

Genomic View for GNG12-AS1 Gene

Genes around GNG12-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
GNG12-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GNG12-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for GNG12-AS1 Gene

Proteins for GNG12-AS1 Gene

Post-translational modifications for GNG12-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GNG12-AS1 Gene

Domains & Families for GNG12-AS1 Gene

Gene Families for GNG12-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with GNG12-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GNG12-AS1 Gene

Function for GNG12-AS1 Gene

Phenotypes From GWAS Catalog for GNG12-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GNG12-AS1 Gene

Localization for GNG12-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for GNG12-AS1 Gene

Pathways & Interactions for GNG12-AS1 Gene

PathCards logo

SuperPathways for GNG12-AS1 Gene

No Data Available

Interacting Proteins for GNG12-AS1 Gene

Gene Ontology (GO) - Biological Process for GNG12-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GNG12-AS1 Gene

Drugs & Compounds for GNG12-AS1 Gene

No Compound Related Data Available

Transcripts for GNG12-AS1 Gene

mRNA/cDNA for GNG12-AS1 Gene

(3) Additional mRNA sequences :
(4) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(5) RNA Central transcripts :

Unigene Clusters for GNG12-AS1 Gene

GNG12 antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for GNG12-AS1 Gene

No ASD Table

Relevant External Links for GNG12-AS1 Gene

GeneLoc Exon Structure for
GNG12-AS1
ECgene alternative splicing isoforms for
GNG12-AS1

Expression for GNG12-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for GNG12-AS1 Gene

SOURCE GeneReport for Unigene cluster for GNG12-AS1 Gene:

Hs.677603
genes like me logo Genes that share expression patterns with GNG12-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GNG12-AS1 Gene

Orthologs for GNG12-AS1 Gene

Evolution for GNG12-AS1 Gene

ENSEMBL:
Gene Tree for GNG12-AS1 (if available)
TreeFam:
Gene Tree for GNG12-AS1 (if available)

No data available for Orthologs for GNG12-AS1 Gene

Paralogs for GNG12-AS1 Gene

No data available for Paralogs for GNG12-AS1 Gene

Variants for GNG12-AS1 Gene

Sequence variations from dbSNP and Humsavar for GNG12-AS1 Gene

SNP ID Clin Chr 01 pos Variation AA Info Type
rs1000008089 -- 67,969,558(+) C/T intron_variant
rs1000008143 -- 67,993,659(+) G/A intron_variant
rs1000011433 -- 68,169,034(+) A/T intron_variant
rs1000014452 -- 68,130,410(+) C/T intron_variant
rs1000019118 -- 67,912,358(+) G/A intron_variant

Structural Variations from Database of Genomic Variants (DGV) for GNG12-AS1 Gene

Variant ID Type Subtype PubMed ID
esv2672790 CNV deletion 23128226
esv2674457 CNV deletion 23128226
esv2749463 CNV deletion 23290073
esv2749475 CNV deletion 23290073
esv3563515 CNV deletion 23714750
esv3563538 CNV deletion 23714750
esv3577909 CNV loss 25503493
esv3577910 CNV loss 25503493
esv3586314 CNV loss 21293372
esv3586315 CNV loss 21293372
esv3586316 CNV loss 21293372
esv3586317 CNV loss 21293372
nsv1140260 OTHER inversion 24896259
nsv477165 CNV novel sequence insertion 20440878
nsv517355 CNV gain+loss 19592680
nsv518820 CNV loss 19592680
nsv522414 CNV loss 19592680
nsv522557 CNV loss 19592680
nsv546448 CNV gain 21841781
nsv830104 CNV gain 17160897
nsv945987 CNV duplication 23825009

Additional Variant Information for GNG12-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
GNG12-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for GNG12-AS1 Gene

Disorders for GNG12-AS1 Gene

Additional Disease Information for GNG12-AS1

No disorders were found for GNG12-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for GNG12-AS1 Gene

Publications for GNG12-AS1 Gene

  1. Transcriptional silencing of long noncoding RNA GNG12-AS1 uncouples its transcriptional and product-related functions. (PMID: 26832224) Stojic L … Murrell A (Nature communications 2016) 2 3 58
  2. Imprinted chromatin around DIRAS3 regulates alternative splicing of GNG12-AS1, a long noncoding RNA. (PMID: 23871723) Niemczyk M … Murrell A (American journal of human genetics 2013) 2 3 58
  3. Multistage genome-wide association meta-analyses identified two new loci for bone mineral density. (PMID: 24249740) Zhang L … Deng HW (Human molecular genetics 2014) 3 58
  4. Genome-wide association study of chemotherapeutic agent-induced severe neutropenia/leucopenia for patients in Biobank Japan. (PMID: 23648065) Low SK … Nakamura Y (Cancer science 2013) 3 58
  5. Genome-wide meta-analysis identifies 56 bone mineral density loci and reveals 14 loci associated with risk of fracture. (PMID: 22504420) Estrada K … Rivadeneira F (Nature genetics 2012) 3 58

Products for GNG12-AS1 Gene

Sources for GNG12-AS1 Gene

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