Aliases for GNG12-AS1 Gene

Subcategory (RNA class) for GNG12-AS1 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for GNG12-AS1 Gene

  • GNG12, DIRAS3 And WLS Antisense RNA 1 2 3 5
  • GNG12-AS1 2 5 165
  • GNG12 Antisense RNA 1 (Non-Protein Coding) 2 3
  • GNG12 Antisense RNA 1 2
  • NONHSAG001765.2 91
  • Lnc-GADD45A-10 165
  • Lnc-GADD45A-9 165
  • HSALNG0004302 164
  • HSALNG0004306 164
  • HSALNG0004297 164

External Ids for GNG12-AS1 Gene

Previous GeneCards Identifiers for GNG12-AS1 Gene

  • GC01P068299

Summaries for GNG12-AS1 Gene

GeneCards Summary for GNG12-AS1 Gene

GNG12-AS1 (GNG12, DIRAS3 And WLS Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for GNG12-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for GNG12-AS1 Gene

Genomics for GNG12-AS1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for GNG12-AS1 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around GNG12-AS1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for GNG12-AS1 Gene

Genomic Locations for GNG12-AS1 Gene
chr1:67,832,287-68,202,988
(GRCh38/hg38)
Size:
370,702 bases
Orientation:
Plus strand
chr1:68,297,971-68,668,670
(GRCh37/hg19)
Size:
370,700 bases
Orientation:
Plus strand

Genomic View for GNG12-AS1 Gene

Genes around GNG12-AS1 on UCSC Golden Path with GeneCards custom track
GNG12-AS1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
GNG12-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GNG12-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for GNG12-AS1 Gene

Proteins for GNG12-AS1 Gene

Post-translational modifications for GNG12-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GNG12-AS1 Gene

Domains & Families for GNG12-AS1 Gene

Gene Families for GNG12-AS1 Gene

genes like me logo Genes that share domains with GNG12-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for GNG12-AS1 Gene

Function for GNG12-AS1 Gene

Phenotypes From GWAS Catalog for GNG12-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GNG12-AS1 Gene

Localization for GNG12-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for GNG12-AS1 Gene

Pathways & Interactions for GNG12-AS1 Gene

PathCards logo

SuperPathways for GNG12-AS1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for GNG12-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for GNG12-AS1 Gene

Drugs & Compounds for GNG12-AS1 Gene

No Compound Related Data Available

Transcripts for GNG12-AS1 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for GNG12-AS1 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS0000525A37_9606 lncRNA 796 4

Ensembl: ENST00000414904 (view in UCSC) ,

LncBook: HSALNT0008524,

LNCipedia: GNG12-AS1:5,

NONCODE: NONHSAT003812.2,

URS000011F547_9606 lncRNA 458 4

Ensembl: ENST00000434072 (view in UCSC) ,

LncBook: HSALNT0008534, HSALNT0008535,

LNCipedia: lnc-GADD45A-9:5,

NONCODE: NONHSAT003817.2,

URS0000759D5C_9606 lncRNA 2247 3

HGNC: 43938,

RefSeq: NR_040077,

NONCODE: NONHSAT003808.2,

URS000043944C_9606 lncRNA 2058 2

Ensembl: ENST00000413628 (view in UCSC) ,

NONCODE: NONHSAT003810.2,

URS00002C941A_9606 lncRNA 2232 1

Ensembl: ENST00000420587 (view in UCSC) ,

GNG12-AS1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for GNG12-AS1 Gene

2 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for GNG12-AS1 Gene

No ASD Table

Relevant External Links for GNG12-AS1 Gene

GeneLoc Exon Structure for
GNG12-AS1

Expression for GNG12-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for GNG12-AS1 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for GNG12-AS1

SOURCE GeneReport for Unigene cluster for GNG12-AS1 Gene:

Hs.677603
genes like me logo Genes that share expression patterns with GNG12-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GNG12-AS1 Gene

Orthologs for GNG12-AS1 Gene

Evolution for GNG12-AS1 Gene

ENSEMBL:
Gene Tree for GNG12-AS1 (if available)
TreeFam:
Gene Tree for GNG12-AS1 (if available)

No data available for Orthologs for GNG12-AS1 Gene

Paralogs for GNG12-AS1 Gene

No data available for Paralogs for GNG12-AS1 Gene

Variants for GNG12-AS1 Gene

Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP for GNG12-AS1 Gene

SNP ID Clinical significance and condition Chr 01 pos Variation AA Info Type
756682 Benign: not provided 68,098,709(+) CA/C FRAMESHIFT_VARIANT,NON_CODING_TRANSCRIPT_VARIANT

Additional dbSNP identifiers (rs#s) for GNG12-AS1 Gene

Structural Variations from Database of Genomic Variants (DGV) for GNG12-AS1 Gene

Variant ID Type Subtype PubMed ID
esv2672790 CNV deletion 23128226
esv2674457 CNV deletion 23128226
esv2749463 CNV deletion 23290073
esv2749475 CNV deletion 23290073
esv3563515 CNV deletion 23714750
esv3563538 CNV deletion 23714750
esv3577909 CNV loss 25503493
esv3577910 CNV loss 25503493
esv3586314 CNV loss 21293372
esv3586315 CNV loss 21293372
esv3586316 CNV loss 21293372
esv3586317 CNV loss 21293372
nsv1140260 OTHER inversion 24896259
nsv477165 CNV novel sequence insertion 20440878
nsv517355 CNV gain+loss 19592680
nsv518820 CNV loss 19592680
nsv522414 CNV loss 19592680
nsv522557 CNV loss 19592680
nsv546448 CNV gain 21841781
nsv830104 CNV gain 17160897
nsv945987 CNV duplication 23825009

Additional Variant Information for GNG12-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
GNG12-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for GNG12-AS1 Gene

Disorders for GNG12-AS1 Gene

No disorders were found for GNG12-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for GNG12-AS1 Gene

Publications for GNG12-AS1 Gene

  1. Transcriptional silencing of long noncoding RNA GNG12-AS1 uncouples its transcriptional and product-related functions. (PMID: 26832224) Stojic L … Murrell A (Nature communications 2016) 2 3
  2. Imprinted chromatin around DIRAS3 regulates alternative splicing of GNG12-AS1, a long noncoding RNA. (PMID: 23871723) Niemczyk M … Murrell A (American journal of human genetics 2013) 2 3
  3. Multistage genome-wide association meta-analyses identified two new loci for bone mineral density. (PMID: 24249740) Zhang L … Deng HW (Human molecular genetics 2014) 3
  4. Genome-wide association study of chemotherapeutic agent-induced severe neutropenia/leucopenia for patients in Biobank Japan. (PMID: 23648065) Low SK … Nakamura Y (Cancer science 2013) 3
  5. Genome-wide meta-analysis identifies 56 bone mineral density loci and reveals 14 loci associated with risk of fracture. (PMID: 22504420) Estrada K … Rivadeneira F (Nature genetics 2012) 3

Products for GNG12-AS1 Gene

Sources for GNG12-AS1 Gene