Aliases for GM2AP2 Gene

Aliases for GM2AP2 Gene

  • GM2 Ganglioside Activator Pseudogene 2 2 3 5
  • GM2AP2 5

External Ids for GM2AP2 Gene

Previous GeneCards Identifiers for GM2AP2 Gene

  • GC01P142584

Summaries for GM2AP2 Gene

GeneCards Summary for GM2AP2 Gene

GM2AP2 (GM2 Ganglioside Activator Pseudogene 2) is a Pseudogene.

Additional gene information for GM2AP2 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for GM2AP2 Gene

Genomics for GM2AP2 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for GM2AP2 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J171390 Enhancer 0.2 FANTOM5 600.7 -1.2 -1246 0.2 GM2AP2 lnc-FMO4-3 piR-40497-003 FMO4 PRRC2C
GH01J171396 Enhancer 0.8 Ensembl ENCODE 0.4 +5.0 5042 1.8 IKZF1 HDAC1 NCOR1 ZNF384 TAL1 HDAC2 VEZF1 PRDM10 TCF12 KDM1A piR-53338-011 FMO4 GM2AP2 lnc-FMO4-3 PRRC2C
GH01J171384 Enhancer 0.2 ENCODE 0.4 -7.5 -7464 1.2 FMO4 GM2AP2 piR-40497-003 lnc-FMO4-3 PRRC2C
GH01J171398 Enhancer 0.2 Ensembl 0.4 +6.1 6072 0.2 piR-53338-011 FMO4 GM2AP2 lnc-FMO4-3 PRRC2C
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around GM2AP2 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for GM2AP2 Gene

Genomic Locations for GM2AP2 Gene
chr1:171,392,229-171,392,791
(GRCh38/hg38)
Size:
563 bases
Orientation:
Plus strand
chr1:171,361,368-171,361,930
(GRCh37/hg19)
Size:
563 bases
Orientation:
Plus strand

Genomic View for GM2AP2 Gene

Genes around GM2AP2 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
GM2AP2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GM2AP2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for GM2AP2 Gene

Proteins for GM2AP2 Gene

Post-translational modifications for GM2AP2 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GM2AP2 Gene

Domains & Families for GM2AP2 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for GM2AP2 Gene

Function for GM2AP2 Gene

Phenotypes From GWAS Catalog for GM2AP2 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GM2AP2 Gene

Localization for GM2AP2 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for GM2AP2 Gene

Pathways & Interactions for GM2AP2 Gene

PathCards logo

SuperPathways for GM2AP2 Gene

No Data Available

Gene Ontology (GO) - Biological Process for GM2AP2 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for GM2AP2 Gene

Drugs & Compounds for GM2AP2 Gene

No Compound Related Data Available

Transcripts for GM2AP2 Gene

mRNA/cDNA for GM2AP2 Gene

1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for GM2AP2 Gene

No ASD Table

Relevant External Links for GM2AP2 Gene

GeneLoc Exon Structure for
GM2AP2

Expression for GM2AP2 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for GM2AP2 Gene

genes like me logo Genes that share expression patterns with GM2AP2: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GM2AP2 Gene

Orthologs for GM2AP2 Gene

Evolution for GM2AP2 Gene

ENSEMBL:
Gene Tree for GM2AP2 (if available)
TreeFam:
Gene Tree for GM2AP2 (if available)

No data available for Orthologs for GM2AP2 Gene

Paralogs for GM2AP2 Gene

No data available for Paralogs for GM2AP2 Gene

Variants for GM2AP2 Gene

Additional Variant Information for GM2AP2 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
GM2AP2

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for GM2AP2 Gene

Disorders for GM2AP2 Gene

Additional Disease Information for GM2AP2

Genetic Association Database
(GAD)

No disorders were found for GM2AP2 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for GM2AP2 Gene

Publications for GM2AP2 Gene

No publications were found for GM2AP2 Gene.

No data available for Mastermind for GM2AP2 Gene

Products for GM2AP2 Gene

Sources for GM2AP2 Gene