Aliases for GLYCAM1 Gene

Aliases for GLYCAM1 Gene

  • Glycosylation Dependent Cell Adhesion Molecule 1 (Pseudogene) 2 3 5
  • Putative Glycosylation-Dependent Cell Adhesion Molecule 1 4
  • Glycosylation Dependent Cell Adhesion Molecule 1 2
  • GlyCAM-1 4

External Ids for GLYCAM1 Gene

Previous GeneCards Identifiers for GLYCAM1 Gene

  • GC00U906255
  • GC12M053288
  • GC12M055001
  • GC12M052040

Summaries for GLYCAM1 Gene

GeneCards Summary for GLYCAM1 Gene

GLYCAM1 (Glycosylation Dependent Cell Adhesion Molecule 1 (Pseudogene)) is a Pseudogene. Among its related pathways are Immunoregulatory interactions between a Lymphoid and a non-Lymphoid cell and Class I MHC mediated antigen processing and presentation.

Additional gene information for GLYCAM1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for GLYCAM1 Gene

Genomics for GLYCAM1 Gene

GeneHancer (GH) Regulatory Elements for GLYCAM1 Gene

Promoters and enhancers for GLYCAM1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH12J054608 Enhancer 0.2 Ensembl 750.6 +1.8 1761 0.2 GLYCAM1 lnc-PPP1R1A-1 PPP1R1A HSALNG0091377
GH12J054603 Enhancer 0.9 Ensembl ENCODE 0.4 +7.2 7185 1 CTCF ZBTB6 ZNF362 HLF RAD21 ZNF384 SP7 PRDM1 ZIC2 TRIM22 HSALNG0091377 GLYCAM1 lnc-PPP1R1A-1
GH12J054605 Enhancer 0.2 FANTOM5 0.6 +4.5 4498 0.1 NCKAP1L PPP1R1A GLYCAM1 HSALNG0091377 lnc-PPP1R1A-1
GH12J054616 Enhancer 0.3 Ensembl 0.4 -6.6 -6639 0.6 GATA3 PPP1R1A GLYCAM1 lnc-PPP1R1A-1 lnc-DCD-1
GH12J054606 Enhancer 0.2 ENCODE 0.6 +3.8 3790 0.2 GLYCAM1 HSALNG0091377 lnc-PPP1R1A-1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around GLYCAM1 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the GLYCAM1 gene promoter:
  • AP-1
  • c-Fos
  • c-Jun
  • C/EBPalpha
  • LCR-F1
  • Pax-4a
  • POU3F2
  • POU3F2 (N-Oct-5a)
  • POU3F2 (N-Oct-5b)
  • RORalpha2

Genomic Locations for GLYCAM1 Gene

Genomic Locations for GLYCAM1 Gene
chr12:54,608,187-54,610,462
(GRCh38/hg38)
Size:
2,276 bases
Orientation:
Minus strand
chr12:55,001,971-55,004,246
(GRCh37/hg19)
Size:
2,276 bases
Orientation:
Minus strand

Genomic View for GLYCAM1 Gene

Genes around GLYCAM1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
GLYCAM1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GLYCAM1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for GLYCAM1 Gene

Proteins for GLYCAM1 Gene

  • Protein details for GLYCAM1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q8IVK1-GLCM1_HUMAN
    Recommended name:
    Putative glycosylation-dependent cell adhesion molecule 1
    Protein Accession:
    Q8IVK1
    Secondary Accessions:
    • Q8IUA8

    Protein attributes for GLYCAM1 Gene

    Size:
    47 amino acids
    Molecular mass:
    5018 Da
    Quaternary structure:
    No Data Available

    Alternative splice isoforms for GLYCAM1 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for GLYCAM1 Gene

Post-translational modifications for GLYCAM1 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

No data available for DME Specific Peptides for GLYCAM1 Gene

Domains & Families for GLYCAM1 Gene

Protein Domains for GLYCAM1 Gene

ProtoNet:

Suggested Antigen Peptide Sequences for GLYCAM1 Gene

GenScript: Design optimal peptide antigens:
  • Putative glycosylation-dependent cell adhesion molecule 1 (GLCM1_HUMAN)

Graphical View of Domain Structure for InterPro Entry

Q8IVK1

UniProtKB/Swiss-Prot:

GLCM1_HUMAN :
  • Belongs to the PP3/GlyCAM-1 family.
Family:
  • Belongs to the PP3/GlyCAM-1 family.
genes like me logo Genes that share domains with GLYCAM1: view

No data available for Gene Families for GLYCAM1 Gene

Function for GLYCAM1 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GLYCAM1 Gene

Localization for GLYCAM1 Gene

Gene Ontology (GO) - Cellular Components for GLYCAM1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005886 plasma membrane TAS --
genes like me logo Genes that share ontologies with GLYCAM1: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Subcellular locations from the Human Protein Atlas (HPA) for GLYCAM1 Gene

Pathways & Interactions for GLYCAM1 Gene

genes like me logo Genes that share pathways with GLYCAM1: view

Pathways by source for GLYCAM1 Gene

Interacting Proteins for GLYCAM1 Gene

Selected Interacting proteins: Q8IVK1-GLCM1_HUMAN for GLYCAM1 Gene via IID

Symbol External ID(s) Details
ABCA9

Gene Ontology (GO) - Biological Process for GLYCAM1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0050776 regulation of immune response TAS --
genes like me logo Genes that share ontologies with GLYCAM1: view

No data available for SIGNOR curated interactions for GLYCAM1 Gene

Drugs & Compounds for GLYCAM1 Gene

No Compound Related Data Available

Transcripts for GLYCAM1 Gene

mRNA/cDNA for GLYCAM1 Gene

(5) Additional mRNA sequences :
(5) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for GLYCAM1 Gene

No ASD Table

Relevant External Links for GLYCAM1 Gene

GeneLoc Exon Structure for
GLYCAM1
ECgene alternative splicing isoforms for
GLYCAM1

Expression for GLYCAM1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for GLYCAM1 Gene

NURSA nuclear receptor signaling pathways regulating expression of GLYCAM1 Gene:

GLYCAM1

SOURCE GeneReport for Unigene cluster for GLYCAM1 Gene:

Hs.483519

mRNA Expression by UniProt/SwissProt for GLYCAM1 Gene:

Q8IVK1-GLCM1_HUMAN
Tissue specificity: Expressed in cells harvested from milk of lactating women. Not found in other tissues.
genes like me logo Genes that share expression patterns with GLYCAM1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GLYCAM1 Gene

Orthologs for GLYCAM1 Gene

Evolution for GLYCAM1 Gene

ENSEMBL:
Gene Tree for GLYCAM1 (if available)
TreeFam:
Gene Tree for GLYCAM1 (if available)

No data available for Orthologs for GLYCAM1 Gene

Paralogs for GLYCAM1 Gene

No data available for Paralogs for GLYCAM1 Gene

Variants for GLYCAM1 Gene

Sequence variations from dbSNP and Humsavar for GLYCAM1 Gene

SNP ID Clin Chr 12 pos Variation AA Info Type
rs1000508617 -- 54,609,170(-) TTTTTTTTT/TTTTTTTT/TTTTTTTTTT intron_variant
rs1002614102 -- 54,607,960(-) G/A downstream_transcript_variant
rs1005380555 -- 54,611,229(-) C/G upstream_transcript_variant
rs1006118477 -- 54,608,208(-) G/A/T non_coding_transcript_variant
rs1007643556 -- 54,609,094(-) A/G intron_variant

Structural Variations from Database of Genomic Variants (DGV) for GLYCAM1 Gene

Variant ID Type Subtype PubMed ID
nsv832421 CNV gain 17160897

Additional Variant Information for GLYCAM1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
GLYCAM1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for GLYCAM1 Gene

Disorders for GLYCAM1 Gene

Additional Disease Information for GLYCAM1

No disorders were found for GLYCAM1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for GLYCAM1 Gene

Publications for GLYCAM1 Gene

  1. Human GlyCAM-1 mRNA is expressed in the mammary gland as splicing variants and encodes various aberrant truncated proteins. (PMID: 12057858) Rasmussen LK … Sørensen ES (Immunology letters 2002) 2 3 4 56
  2. Expression of potential lymphocyte trafficking mediator molecules in the mammary gland. (PMID: 12588680) Nishimura T (Veterinary research 2003) 3 56

Products for GLYCAM1 Gene

Sources for GLYCAM1 Gene