Aliases for GLIS2-AS1 Gene

Subcategory (RNA class) for GLIS2-AS1 Gene

lncRNA

Quality Score for this RNA gene is

16

Aliases for GLIS2-AS1 Gene

  • GLIS2 Antisense RNA 1 2 3 5
  • GLIS2-AS1 2 170
  • NONHSAG018439 94
  • HSALNG0109230 169

External Ids for GLIS2-AS1 Gene

Additional External Ids for GLIS2-AS1 Gene

Summaries for GLIS2-AS1 Gene

GeneCards Summary for GLIS2-AS1 Gene

GLIS2-AS1 (GLIS2 Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for GLIS2-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for GLIS2-AS1 Gene

Genomics for GLIS2-AS1 Gene

GeneHancer (GH) Regulatory Elements for GLIS2-AS1 Gene

Promoters and enhancers for GLIS2-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH16J004327 Promoter/Enhancer 1.5 Ensembl ENCODE CraniofacialAtlas dbSUPER 750.6 -0.1 -126 2.7 CTCF RBPJ NR2F1 NR2F6 MIXL1 RAD21 ZNF652 ELF3 AHR SP1 GLIS2-AS1 PAM16 CORO7 ENSG00000262712 GLIS2
GH16J004326 Enhancer 0.4 dbSUPER 750.6 +1.9 1884 0.8 PRDM10 KLF17 KLF1 GLIS2-AS1 lnc-PAM16-6 HMOX2 NMRAL1 GLIS2
GH16J005032 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 12.4 -706.4 -706433 5.5 SIN3A SP1 ZBTB40 SREBF1 SIX5 LCORL MLX RBPJ POLR2A USF2 NAGPA ALG1 lnc-NAGPA-1 UBN1 ZNF500 GLYR1 C16orf89 GLIS2-AS1 ANKS3 PPL
GH16J004243 Enhancer 1.2 Ensembl ENCODE dbSUPER 12.6 +82.3 82318 5.1 ZBTB40 L3MBTL2 TEAD4 GTF2F1 BACH1 MYC POLR2A ZNF680 ZNF644 GMEB1 lnc-GLIS2-4 LINC01569 GLIS2-AS1 VASN lnc-GLIS2-5
GH16J004494 Enhancer 0.7 ENCODE dbSUPER 12.5 -167.7 -167651 3.3 ZNF121 BCL6B SP7 ZNF680 POLR2A ZNF639 FOS FOXA2 BCL6 RARA NMRAL1 lnc-NMRAL1-1 HMOX2 GLIS2-AS1 CDIP1 NUDT16L1 piR-58757
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around GLIS2-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for GLIS2-AS1 Gene

Genomic Locations for GLIS2-AS1 Gene
chr16:4,317,548-4,328,342
(GRCh38/hg38)
Size:
10,795 bases
Orientation:
Minus strand
chr16:4,374,668-4,378,341
(GRCh37/hg19)
Size:
3,674 bases
Orientation:
Minus strand

Genomic View for GLIS2-AS1 Gene

Genes around GLIS2-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
GLIS2-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GLIS2-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for GLIS2-AS1 Gene

Proteins for GLIS2-AS1 Gene

Post-translational modifications for GLIS2-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GLIS2-AS1 Gene

Domains & Families for GLIS2-AS1 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for GLIS2-AS1 Gene

Function for GLIS2-AS1 Gene

Phenotypes From GWAS Catalog for GLIS2-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GLIS2-AS1 Gene

Localization for GLIS2-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for GLIS2-AS1 Gene

Pathways & Interactions for GLIS2-AS1 Gene

PathCards logo

SuperPathways for GLIS2-AS1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for GLIS2-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GLIS2-AS1 Gene

Drugs & Compounds for GLIS2-AS1 Gene

No Compound Related Data Available

Transcripts for GLIS2-AS1 Gene

mRNA/cDNA for GLIS2-AS1 Gene

(1) REFSEQ mRNAs :
(2) Additional mRNA sequences :
(2) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(6) RNACentral transcripts :
(4) LncBook transcripts :
(6) LNCipedia transcripts :
(2) NONCODE transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for GLIS2-AS1 Gene

No ASD Table

Relevant External Links for GLIS2-AS1 Gene

GeneLoc Exon Structure for
GLIS2-AS1
ECgene alternative splicing isoforms for
GLIS2-AS1

Expression for GLIS2-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for GLIS2-AS1 Gene

genes like me logo Genes that share expression patterns with GLIS2-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GLIS2-AS1 Gene

Orthologs for GLIS2-AS1 Gene

Evolution for GLIS2-AS1 Gene

ENSEMBL:
Gene Tree for GLIS2-AS1 (if available)
TreeFam:
Gene Tree for GLIS2-AS1 (if available)

No data available for Orthologs for GLIS2-AS1 Gene

Paralogs for GLIS2-AS1 Gene

No data available for Paralogs for GLIS2-AS1 Gene

Variants for GLIS2-AS1 Gene

Sequence variations from dbSNP and Humsavar for GLIS2-AS1 Gene

SNP ID Clin Chr 16 pos Variation AA Info Type
rs1000189230 -- 4,324,246(-) T/C downstream_transcript_variant
rs1001042862 -- 4,327,575(-) G/A/T intron_variant
rs1001165679 -- 4,327,885(-) C/T intron_variant
rs1001324476 -- 4,327,473(-) C/G/T intron_variant
rs1002204692 -- 4,328,113(-) C/T intron_variant

Structural Variations from Database of Genomic Variants (DGV) for GLIS2-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv1046986 CNV gain 25217958
nsv471075 CNV loss 18288195
nsv527866 CNV loss 19592680
nsv571274 CNV gain 21841781
nsv571282 CNV gain 21841781
nsv571300 CNV loss 21841781

Additional Variant Information for GLIS2-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
GLIS2-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for GLIS2-AS1 Gene

Disorders for GLIS2-AS1 Gene

Additional Disease Information for GLIS2-AS1

No disorders were found for GLIS2-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for GLIS2-AS1 Gene

Publications for GLIS2-AS1 Gene

  1. Shotgun sequencing of the human transcriptome with ORF expressed sequence tags. (PMID: 10737800) Dias Neto E … Simpson AJ (Proceedings of the National Academy of Sciences of the United States of America 2000) 3 56

Products for GLIS2-AS1 Gene

Sources for GLIS2-AS1 Gene