Aliases for GLIS2-AS1 Gene

Subcategory (RNA class) for GLIS2-AS1 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for GLIS2-AS1 Gene

  • GLIS2 Antisense RNA 1 2 3 5
  • GLIS2-AS1 2 5 165
  • NONHSAG018439.2 91
  • HSALNG0109230 164

External Ids for GLIS2-AS1 Gene

Additional External Ids for GLIS2-AS1 Gene

Summaries for GLIS2-AS1 Gene

GeneCards Summary for GLIS2-AS1 Gene

GLIS2-AS1 (GLIS2 Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for GLIS2-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for GLIS2-AS1 Gene

Genomics for GLIS2-AS1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for GLIS2-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH16J004327 Promoter/Enhancer 1.9 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 600.7 -0.1 -126 2.7 HNRNPL GATAD2A CTCF PRDM10 TFE3 IKZF1 KDM1A RCOR2 FOXA1 LARP7 GLIS2-AS1 PAM16 CORO7 ENSG00000262712 GLIS2
GH16J004326 Enhancer 0.5 dbSUPER 600.7 +1.9 1884 0.8 PRDM10 ZNF600 KLF17 BCL11B KLF1 GLIS2-AS1 lnc-PAM16-6 HMOX2 NMRAL1 GLIS2 PAM16
GH16J004313 Promoter/Enhancer 2 Ensembl ENCODE CraniofacialAtlas dbSUPER 0.4 +8.8 8776 12.3 HNRNPL CTCF ZBTB33 PRDM10 ZNF629 ZNF512 IKZF1 KDM1A ZNF692 BACH1 ZNF500 PAM16 VASN CREBBP ENSG00000261938 NMRAL1 LINC01569 HMOX2 CORO7 GLIS2
GH16J004330 Enhancer 0.9 ENCODE dbSUPER 0.7 -2.1 -2123 0.2 HNRNPL CTCF JUND ZNF143 ZIC2 RXRB REST RAD21 TRIM22 RUNX3 GLIS2-AS1 ENSG00000262712 GLIS2 PAM16
GH16J004332 Promoter 0.3 EPDnew 0.7 -3.8 -3766 0.1 GLIS2 GLIS2-AS1 ENSG00000262712 PAM16
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around GLIS2-AS1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for GLIS2-AS1 Gene

Genomic Locations for GLIS2-AS1 Gene
chr16:4,317,548-4,328,342
(GRCh38/hg38)
Size:
10,795 bases
Orientation:
Minus strand
chr16:4,374,668-4,378,341
(GRCh37/hg19)
Size:
3,674 bases
Orientation:
Minus strand

Genomic View for GLIS2-AS1 Gene

Genes around GLIS2-AS1 on UCSC Golden Path with GeneCards custom track
GLIS2-AS1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
GLIS2-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GLIS2-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for GLIS2-AS1 Gene

Proteins for GLIS2-AS1 Gene

Post-translational modifications for GLIS2-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GLIS2-AS1 Gene

Domains & Families for GLIS2-AS1 Gene

Gene Families for GLIS2-AS1 Gene

genes like me logo Genes that share domains with GLIS2-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for GLIS2-AS1 Gene

Function for GLIS2-AS1 Gene

Phenotypes From GWAS Catalog for GLIS2-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GLIS2-AS1 Gene

Localization for GLIS2-AS1 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for GLIS2-AS1 gene
Compartment Confidence
extracellular 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for GLIS2-AS1 Gene

Pathways & Interactions for GLIS2-AS1 Gene

PathCards logo

SuperPathways for GLIS2-AS1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for GLIS2-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for GLIS2-AS1 Gene

Drugs & Compounds for GLIS2-AS1 Gene

No Compound Related Data Available

Transcripts for GLIS2-AS1 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for GLIS2-AS1 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000075C229_9606 lncRNA 359 4

HGNC: 51381,

RefSeq: NR_110901,

LncBook: HSALNT0227087, HSALNT0227089,

LNCipedia: GLIS2-AS1:2,

URS00004710A5_9606 lncRNA 340 4

Ensembl: ENST00000576080 (view in UCSC) , ENST00000633516 (view in UCSC) ,

LncBook: HSALNT0227090,

LNCipedia: GLIS2-AS1:1,

NONCODE: NONHSAT148121.2,

URS00008B3881_9606 lncRNA 847 2

LNCipedia: GLIS2-AS1:3,

NONCODE: NONHSAT173555.1,

URS0000D5A6F1_9606 lncRNA 342 2

LncBook: HSALNT0227091,

LNCipedia: GLIS2-AS1:4,

URS0000D5A86A_9606 lncRNA 7936 1

LNCipedia: GLIS2-AS1:5,

GLIS2-AS1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for GLIS2-AS1 Gene

2 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for GLIS2-AS1 Gene

No ASD Table

Relevant External Links for GLIS2-AS1 Gene

GeneLoc Exon Structure for
GLIS2-AS1

Expression for GLIS2-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for GLIS2-AS1 Gene

genes like me logo Genes that share expression patterns with GLIS2-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GLIS2-AS1 Gene

Orthologs for GLIS2-AS1 Gene

Evolution for GLIS2-AS1 Gene

ENSEMBL:
Gene Tree for GLIS2-AS1 (if available)
TreeFam:
Gene Tree for GLIS2-AS1 (if available)

No data available for Orthologs for GLIS2-AS1 Gene

Paralogs for GLIS2-AS1 Gene

No data available for Paralogs for GLIS2-AS1 Gene

Variants for GLIS2-AS1 Gene

Additional dbSNP identifiers (rs#s) for GLIS2-AS1 Gene

Structural Variations from Database of Genomic Variants (DGV) for GLIS2-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv1046986 CNV gain 25217958
nsv471075 CNV loss 18288195
nsv527866 CNV loss 19592680
nsv571274 CNV gain 21841781
nsv571282 CNV gain 21841781
nsv571300 CNV loss 21841781

Additional Variant Information for GLIS2-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
GLIS2-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for GLIS2-AS1 Gene

Disorders for GLIS2-AS1 Gene

No disorders were found for GLIS2-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for GLIS2-AS1 Gene

Publications for GLIS2-AS1 Gene

  1. Shotgun sequencing of the human transcriptome with ORF expressed sequence tags. (PMID: 10737800) Dias Neto E … Simpson AJ (Proceedings of the National Academy of Sciences of the United States of America 2000) 3

Products for GLIS2-AS1 Gene

Sources for GLIS2-AS1 Gene