This locus represents naturally occurring read-through transcription between the neighboring GJA9 (gap junction protein, alpha 9, 59kDa) and MYCBP (c-myc binding protein) genes on chromosome 1. Alternative splicing results in multiple transcript variants. These variants are either candidates for nonsense-mediated mRNA decay (NMD) and/or they lack a significant open reading fram... See more...

Aliases for GJA9-MYCBP Gene

Subcategory (RNA class) for GJA9-MYCBP Gene

lncRNA

Number of RNA Genes sources:

3 / 14

Aliases for GJA9-MYCBP Gene

  • GJA9-MYCBP Readthrough 3
  • Gap Junction Alpha-10 Protein 3
  • Gap Junction Alpha-9 Protein 3
  • NONHSAG001104 92
  • HSALNG0002724 167
  • Connexin-58 3
  • Connexin-59 3
  • Lnc-GJA9-1 168
  • GJA10 3
  • Cx58 3
  • Cx59 3
  • GJA9 3

External Ids for GJA9-MYCBP Gene

Previous GeneCards Identifiers for GJA9-MYCBP Gene

  • GC01U903151
  • GC01M039330
  • GC01M038863
  • GC01M038842

Summaries for GJA9-MYCBP Gene

Entrez Gene Summary for GJA9-MYCBP Gene

  • This locus represents naturally occurring read-through transcription between the neighboring GJA9 (gap junction protein, alpha 9, 59kDa) and MYCBP (c-myc binding protein) genes on chromosome 1. Alternative splicing results in multiple transcript variants. These variants are either candidates for nonsense-mediated mRNA decay (NMD) and/or they lack a significant open reading frame, thus they are unlikely to produce protein products. [provided by RefSeq, Dec 2010]

GeneCards Summary for GJA9-MYCBP Gene

GJA9-MYCBP (GJA9-MYCBP Readthrough) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for GJA9-MYCBP Gene

No data available for CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for GJA9-MYCBP Gene

Genomics for GJA9-MYCBP Gene

GeneHancer (GH) Regulatory Elements for GJA9-MYCBP Gene

Promoters and enhancers for GJA9-MYCBP Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J038881 Promoter 0.5 EPDnew 500.7 +0.0 19 0.1 JUND ATF3 ENSG00000274944 GJA9 GJA9-MYCBP lnc-AKIRIN1-1 ENSG00000228436
GH01J038871 Promoter/Enhancer 2 EPDnew Ensembl ENCODE CraniofacialAtlas 0.4 +8.4 8425 2.8 HNRNPK ZBTB40 CTCF TCF12 SIN3A NRF1 POLR2G SP1 GTF2E2 ZFX MYCBP ENSG00000273637 lnc-AKIRIN1-15 SF3A3 PPIE INPP5B PABPC4-AS1 SNORA55 AKIRIN1 PPIEL
GH01J038888 Enhancer 0.7 ENCODE 0.4 -7.3 -7347 1.9 NCOR1 TEAD1 ZSCAN9 FOXA2 SAP130 MIER3 CREM FOXP1 DNMT3B CHD4 RHBDL2 GJA9 GJA9-MYCBP ENSG00000228436 LOC105378662
GH01J038891 Enhancer 0.6 FANTOM5 0.4 -10.0 -9983 0.4 FOXK2 CTCF RAD21 SAP130 PBX2 SIN3A RXRA SP1 FOXA3 RHBDL2 MACF1 GJA9 GJA9-MYCBP LOC105378662 ENSG00000228436
GH01J038892 Enhancer 0.6 Ensembl 0.4 -10.5 -10474 0.2 FOXK2 CTCF SMC3 FOXA2 RAD21 SAP130 PBX2 EGR1 SIN3A MEIS2 GJA9 GJA9-MYCBP LOC105378662 ENSG00000228436 RHBDL2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around GJA9-MYCBP on UCSC Golden Path with GeneCards custom track

Genomic Locations for GJA9-MYCBP Gene

Genomic Locations for GJA9-MYCBP Gene
chr1:38,862,490-38,881,626
(GRCh38/hg38)
Size:
19,137 bases
Orientation:
Minus strand
chr1:39,328,162-39,347,298
(GRCh37/hg19)
Size:
19,137 bases
Orientation:
Minus strand

Genomic View for GJA9-MYCBP Gene

Genes around GJA9-MYCBP on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
GJA9-MYCBP Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GJA9-MYCBP Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for GJA9-MYCBP Gene

Proteins for GJA9-MYCBP Gene

Post-translational modifications for GJA9-MYCBP Gene

No Post-translational modifications

No data available for DME Specific Peptides for GJA9-MYCBP Gene

Domains & Families for GJA9-MYCBP Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for GJA9-MYCBP Gene

Function for GJA9-MYCBP Gene

Phenotypes From GWAS Catalog for GJA9-MYCBP Gene

genes like me logo Genes that share phenotypes with GJA9-MYCBP: view

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GJA9-MYCBP Gene

Localization for GJA9-MYCBP Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for GJA9-MYCBP Gene

Pathways & Interactions for GJA9-MYCBP Gene

PathCards logo

SuperPathways for GJA9-MYCBP Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for GJA9-MYCBP Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for GJA9-MYCBP Gene

Drugs & Compounds for GJA9-MYCBP Gene

No Compound Related Data Available

Transcripts for GJA9-MYCBP Gene

mRNA/cDNA for GJA9-MYCBP Gene

Alternative Splicing Database (ASD) splice patterns (SP) for GJA9-MYCBP Gene

No ASD Table

Relevant External Links for GJA9-MYCBP Gene

GeneLoc Exon Structure for
GJA9-MYCBP

Expression for GJA9-MYCBP Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for GJA9-MYCBP Gene

genes like me logo Genes that share expression patterns with GJA9-MYCBP: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GJA9-MYCBP Gene

Orthologs for GJA9-MYCBP Gene

No data available for Orthologs and Evolution for GJA9-MYCBP Gene

Paralogs for GJA9-MYCBP Gene

No data available for Paralogs for GJA9-MYCBP Gene

Variants for GJA9-MYCBP Gene

Additional dbSNP identifiers (rs#s) for GJA9-MYCBP Gene

Structural Variations from Database of Genomic Variants (DGV) for GJA9-MYCBP Gene

Variant ID Type Subtype PubMed ID
esv3585774 CNV loss 21293372

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Variation tolerance and Additional Variant Information for GJA9-MYCBP Gene

Disorders for GJA9-MYCBP Gene

No disorders were found for GJA9-MYCBP Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GJA9-MYCBP Gene

Publications for GJA9-MYCBP Gene

  1. Expression of conjoined genes: another mechanism for gene regulation in eukaryotes. (PMID: 20967262) Prakash T … Taylor TD (PloS one 2010) 3 54
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 54

No data available for Mastermind for GJA9-MYCBP Gene

Products for GJA9-MYCBP Gene

Sources for GJA9-MYCBP Gene