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Aliases for GIHCG Gene

Subcategory (RNA class) for GIHCG Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for GIHCG Gene

  • GIHCG Inhibitor Of MiR-200b/200a/429 Expression 2 3
  • LncRNA Gradually Increased During Hepatocarcinogenesis 2 3
  • GIHCG, Inhibitor Of MiR-200b/200a/429 Expression 2 5
  • LncRNA-GIHCG 3

External Ids for GIHCG Gene

Previous GeneCards Identifiers for GIHCG Gene

  • GC12M057962
  • GC12M057957

Summaries for GIHCG Gene

GeneCards Summary for GIHCG Gene

GIHCG (GIHCG Inhibitor Of MiR-200b/200a/429 Expression) is an RNA Gene, and is affiliated with the non-coding RNA class. Diseases associated with GIHCG include Hepatocellular Carcinoma.

Additional gene information for GIHCG Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for GIHCG Gene

Genomics for GIHCG Gene

GeneHancer (GH) Regulatory Elements for GIHCG Gene

Promoters and enhancers for GIHCG Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH12J057933 Promoter/Enhancer 1.7 Ensembl ENCODE dbSUPER 600.7 +0.7 716 3.5 ZFX ELF3 NKRF MLLT1 CEBPG GTF2F1 CSDE1 ZNF687 MCM2 ELF1 GIHCG PIR34372 PIR56855 PIR62650 PIR53894 ATP23 NXPH4 PIR37489
GH12J058423 Enhancer 1 FANTOM5 ENCODE 6.3 -489.2 -489193 3.3 FOSL2 POLR2A IKZF2 REST SMARCC1 BRCA1 SOX13 CEBPB CHD2 JUN GIHCG EEF1AKMT3 LRIG3 LOC105369788 ENSG00000258133
GH12J058363 Enhancer 1 FANTOM5 Ensembl ENCODE 6 -429.0 -429000 2.6 MAFK POLR2A SCRT2 SP1 FOS FOSL2 JUND MAFF LOC101060021 GIHCG ATP23 ENSG00000258133
GH12J058412 Enhancer 0.8 Ensembl ENCODE 6.3 -478.3 -478336 4.6 CTCF CEBPB SP1 FOS STAT1 FOSL2 JUN POLR2A GIHCG ENSG00000258133 LOC105369788
GH12J058433 Enhancer 0.6 Ensembl ENCODE 6.2 -498.0 -498015 0.7 JUN JUND EP300 GIHCG LOC105369788 ENSG00000258133
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around GIHCG on UCSC Golden Path with GeneCards custom track

Genomic Locations for GIHCG Gene

Genomic Locations for GIHCG Gene
chr12:57,931,449-57,936,175
(GRCh38/hg38)
Size:
4,727 bases
Orientation:
Minus strand
chr12:58,325,232-58,329,958
(GRCh37/hg19)
Size:
4,727 bases
Orientation:
Minus strand

Genomic View for GIHCG Gene

Genes around GIHCG on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
GIHCG Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GIHCG Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for GIHCG Gene

Proteins for GIHCG Gene

No data available for DME Specific Peptides for GIHCG Gene

Domains & Families for GIHCG Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GIHCG Gene

Function for GIHCG Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GIHCG Gene

Localization for GIHCG Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for GIHCG Gene

Pathways & Interactions for GIHCG Gene

PathCards logo

SuperPathways for GIHCG Gene

No Data Available

Interacting Proteins for GIHCG Gene

Gene Ontology (GO) - Biological Process for GIHCG Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GIHCG Gene

Drugs & Compounds for GIHCG Gene

No Compound Related Data Available

Transcripts for GIHCG Gene

mRNA/cDNA for GIHCG Gene

(3) Additional mRNA sequences :
(4) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(3) RNA Central transcripts :

Unigene Clusters for GIHCG Gene

Uncharacterized LOC100506844:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for GIHCG Gene

No ASD Table

Relevant External Links for GIHCG Gene

GeneLoc Exon Structure for
GIHCG
ECgene alternative splicing isoforms for
GIHCG

Expression for GIHCG Gene

SOURCE GeneReport for Unigene cluster for GIHCG Gene:

Hs.90286
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GIHCG Gene

Orthologs for GIHCG Gene

Evolution for GIHCG Gene

ENSEMBL:
Gene Tree for GIHCG (if available)
TreeFam:
Gene Tree for GIHCG (if available)

No data available for Orthologs for GIHCG Gene

Paralogs for GIHCG Gene

No data available for Paralogs for GIHCG Gene

Variants for GIHCG Gene

Sequence variations from dbSNP and Humsavar for GIHCG Gene

SNP ID Clin Chr 12 pos Variation AA Info Type
rs1000252093 -- 57,934,654(-) G/A intron_variant
rs1000331824 -- 57,931,073(-) T/C downstream_transcript_variant
rs1000386820 -- 57,934,986(-) G/C intron_variant
rs1000618955 -- 57,936,053(-) C/G/T non_coding_transcript_variant
rs1000724801 -- 57,936,297(-) G/A upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for GIHCG Gene

Variant ID Type Subtype PubMed ID
nsv559046 CNV gain 21841781

Additional Variant Information for GIHCG Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
GIHCG

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for GIHCG Gene

Disorders for GIHCG Gene

MalaCards: The human disease database

(1) MalaCards diseases for GIHCG Gene - From: LncRNADisease

Disorder Aliases PubMed IDs
hepatocellular carcinoma
  • hcc
- elite association - COSMIC cancer census association via MalaCards
Search GIHCG in MalaCards View complete list of genes associated with diseases

Additional Disease Information for GIHCG

genes like me logo Genes that share disorders with GIHCG: view

No data available for UniProtKB/Swiss-Prot and Genatlas for GIHCG Gene

Publications for GIHCG Gene

  1. Long noncoding RNA GIHCG is a potential diagnostic and prognostic biomarker and therapeutic target for renal cell carcinoma. (PMID: 29565468) D'Aniello C … Cavaliere C (European review for medical and pharmacological sciences 2018) 2 3 58
  2. Long noncoding RNA GIHCG is a potential diagnostic and prognostic biomarker and therapeutic target for renal cell carcinoma. (PMID: 29364470) He ZH … Han JY (European review for medical and pharmacological sciences 2018) 2 3 58
  3. Long noncoding RNA GIHCG enhanced tongue squamous cell carcinoma progression through regulating miR-429. (PMID: 29953645) Ma L … Zuo Z (Journal of cellular biochemistry 2018) 2 3 58
  4. Long noncoding RNA GIHCG promotes hepatocellular carcinoma progression through epigenetically regulating miR-200b/a/429. (PMID: 27380494) Sui CJ … Yang JM (Journal of molecular medicine (Berlin, Germany) 2016) 2 3 58
  5. The transcriptome of human CD34+ hematopoietic stem-progenitor cells. (PMID: 19416867) Kim YC … Wang SM (Proceedings of the National Academy of Sciences of the United States of America 2009) 3 58

Products for GIHCG Gene

Sources for GIHCG Gene

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