Aliases for GIHCG Gene

Subcategory (RNA class) for GIHCG Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for GIHCG Gene

  • GIHCG Inhibitor Of MiR-200b/200a/429 Expression 2 3 5
  • LncRNA Gradually Increased During Hepatocarcinogenesis 2 3
  • LncRNA-GIHCG 2 3
  • GIHCG 2 5
  • GIHCG, Inhibitor Of MiR-200b/200a/429 Expression 2
  • NONHSAG011461.2 91
  • HSALNG0091676 164
  • Lnc-CTDSP2-2 165

External Ids for GIHCG Gene

Additional External Ids for GIHCG Gene

Previous GeneCards Identifiers for GIHCG Gene

  • GC12M057962
  • GC12M057966

Summaries for GIHCG Gene

GeneCards Summary for GIHCG Gene

GIHCG (GIHCG Inhibitor Of MiR-200b/200a/429 Expression) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with GIHCG include Hepatocellular Carcinoma.

Additional gene information for GIHCG Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for GIHCG Gene

Genomics for GIHCG Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for GIHCG Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH12J057939 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 600.7 +0.6 642 3.4 GATAD2A PRDM10 LEF1 IKZF1 POLR2A BACH1 JUND FOXA1 PRDM1 ZNF143 ATP23 GIHCG NONHSAG011462.2 DTX3 ENSG00000270039 NAB2 ARHGAP9 piR-39605 LRIG3
GH12J057933 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 600.4 +6.6 6584 3.7 CREB1 GATAD2A ZNF629 RFX1 KDM1A POLR2A ETV6 JUND STAT3 GABPA piR-39605 piR-61856 piR-41373 piR-59895 GIHCG ATP23 NXPH4 LRIG3
GH12J058423 Enhancer 0.9 FANTOM5 ENCODE 6.2 -483.2 -483225 3.3 REST YY1 SOX13 CEBPB SP1 SMARCC1 JUND BRCA1 ZBTB26 EZH2 GIHCG EEF1AKMT3 LRIG3 HSALNG0091709 RF00017-1167 ATP23
GH12J058363 Enhancer 0.9 FANTOM5 Ensembl ENCODE 6 -423.1 -423058 3.2 SCRT2 SP1 JUND ESR1 FOS FOSL2 MAFK MAFF POLR2A GIHCG ATP23 piR-37663-018 ENSG00000258133 LRIG3
GH12J058412 Enhancer 0.7 Ensembl ENCODE 6.3 -472.1 -472071 5.2 CTCF CEBPB SP1 NR3C1 FOS FOSL2 STAT1 MAFK JUN RAD21 GIHCG RF00017-1167 HSALNG0091709 ATP23 LRIG3
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around GIHCG on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for GIHCG Gene

Genomic Locations for GIHCG Gene
chr12:57,930,035-57,942,143
(GRCh38/hg38)
Size:
12,109 bases
Orientation:
Minus strand
chr12:58,325,232-58,329,958
(GRCh37/hg19)
Size:
4,727 bases
Orientation:
Minus strand

Genomic View for GIHCG Gene

Genes around GIHCG on UCSC Golden Path with GeneCards custom track
GIHCG in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
GIHCG Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GIHCG Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for GIHCG Gene

Proteins for GIHCG Gene

No data available for DME Specific Peptides for GIHCG Gene

Domains & Families for GIHCG Gene

Gene Families for GIHCG Gene

genes like me logo Genes that share domains with GIHCG: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for GIHCG Gene

Function for GIHCG Gene

Phenotypes From GWAS Catalog for GIHCG Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GIHCG Gene

Localization for GIHCG Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for GIHCG Gene

Pathways & Interactions for GIHCG Gene

PathCards logo

SuperPathways for GIHCG Gene

No Data Available

Gene Ontology (GO) - Biological Process for GIHCG Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for GIHCG Gene

Drugs & Compounds for GIHCG Gene

No Compound Related Data Available

Transcripts for GIHCG Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for GIHCG Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00005CEF4E_9606 lncRNA 705 4

Ensembl: ENST00000570447 (view in UCSC) ,

LncBook: HSALNT0190088,

LNCipedia: lnc-CTDSP2-2:7,

NONCODE: NONHSAT029005.2,

URS000075D52A_9606 lncRNA 699 2

HGNC: 52649,

RefSeq: NR_038269,

URS00001ED6BE_9606 lncRNA 451 2

Ensembl: ENST00000551421 (view in UCSC) ,

LNCipedia: lnc-CTDSP2-2:5,

URS0000EF311E_9606 lncRNA 2214 1

Ensembl: ENST00000659090 (view in UCSC) ,

URS0000EF037F_9606 lncRNA 1946 1

Ensembl: ENST00000655210 (view in UCSC) ,

GIHCG in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for GIHCG Gene

3 NCBI additional mRNA sequence :
2 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for GIHCG Gene

No ASD Table

Relevant External Links for GIHCG Gene

GeneLoc Exon Structure for
GIHCG

Expression for GIHCG Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for GIHCG

SOURCE GeneReport for Unigene cluster for GIHCG Gene:

Hs.90286
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GIHCG Gene

Orthologs for GIHCG Gene

Evolution for GIHCG Gene

ENSEMBL:
Gene Tree for GIHCG (if available)
TreeFam:
Gene Tree for GIHCG (if available)

No data available for Orthologs for GIHCG Gene

Paralogs for GIHCG Gene

No data available for Paralogs for GIHCG Gene

Variants for GIHCG Gene

Additional dbSNP identifiers (rs#s) for GIHCG Gene

Structural Variations from Database of Genomic Variants (DGV) for GIHCG Gene

Variant ID Type Subtype PubMed ID
nsv559046 CNV gain 21841781

Additional Variant Information for GIHCG Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
GIHCG

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for GIHCG Gene

Disorders for GIHCG Gene

MalaCards: The human disease database

(1) MalaCards diseases for GIHCG Gene - From: LncRNADisease

Disorder Aliases PubMed IDs
hepatocellular carcinoma
  • hcc
- elite association - COSMIC cancer census association via MalaCards
Search GIHCG in MalaCards View complete list of genes associated with diseases
genes like me logo Genes that share disorders with GIHCG: view

No data available for UniProtKB/Swiss-Prot and Genatlas for GIHCG Gene

Publications for GIHCG Gene

  1. Long noncoding RNA GIHCG is a potential diagnostic and prognostic biomarker and therapeutic target for renal cell carcinoma. (PMID: 29364470) He ZH … Han JY (European review for medical and pharmacological sciences 2018) 2 3
  2. Long noncoding RNA GIHCG is a potential diagnostic and prognostic biomarker and therapeutic target for renal cell carcinoma. (PMID: 29565468) D'Aniello C … Cavaliere C (European review for medical and pharmacological sciences 2018) 2 3
  3. Long noncoding RNA GIHCG enhanced tongue squamous cell carcinoma progression through regulating miR-429. (PMID: 29953645) Ma L … Zuo Z (Journal of cellular biochemistry 2018) 2 3
  4. Long noncoding RNA GIHCG promotes hepatocellular carcinoma progression through epigenetically regulating miR-200b/a/429. (PMID: 27380494) Sui CJ … Yang JM (Journal of molecular medicine (Berlin, Germany) 2016) 2 3
  5. LncRNA GIHCG promotes development of ovarian cancer by regulating microRNA-429. (PMID: 30556850) Yao N … Guo BQ (European review for medical and pharmacological sciences 2018) 3

Products for GIHCG Gene

Sources for GIHCG Gene