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GGTLC1 Gene(Protein Coding)

Gamma-Glutamyltransferase Light Chain 1

GCID:
GC20M023914
GIFtS:
35
Genes Participants
UDN Logo

Aliases for GGTLC1 Gene

Aliases for GGTLC1 Gene

  • Gamma-Glutamyltransferase Light Chain 1 2 3 4 5
  • Gamma-Glutamyltransferase-Like Activity 4 2 3 4
  • Gamma-Glutamyltransferase-Like Activity 3 2 3
  • Gamma-Glutamyltransferase-Like Protein 6 3 4
  • GGTLA4 3 4
  • Glutathione Hydrolase Light Chain 1 3
  • Gamma-Glutamyl Transpeptidase 3
  • DJ831C21.1 3
  • DJ831C21.2 3
  • EC 2.3.2.2 56
  • GGTLA3 3
  • GGTL6 3

External Ids for GGTLC1 Gene

Previous HGNC Symbols for GGTLC1 Gene

  • GGTLA4
  • GGTLA3

Summaries for GGTLC1 Gene

Entrez Gene Summary for GGTLC1 Gene

  • This gene encodes a member of the gamma-glutamyl transpeptidase (GGT) family, which are important in the metabolism of glutathione. The most ubiquitously expressed human GGT gene, GGT1, encodes a single transmembrane polypeptide that is post-translationally processed to form a heavy and a light chain. In contrast, the product of this gene only contains homology to the light chain region, and lacks a transmembrane domain. Multiple alternatively spliced variants, encoding the same protein, have been identified. [provided by RefSeq, Oct 2008]

GeneCards Summary for GGTLC1 Gene

GGTLC1 (Gamma-Glutamyltransferase Light Chain 1) is a Protein Coding gene. Among its related pathways are Eicosanoid Synthesis and NRF2 pathway. Gene Ontology (GO) annotations related to this gene include obsolete gamma-glutamyltransferase activity. An important paralog of this gene is GGT1.

Additional gene information for GGTLC1 Gene

No data available for CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for GGTLC1 Gene

Genomics for GGTLC1 Gene

Products:

  1. Regulatory Element

GeneHancer (GH) Regulatory Elements for GGTLC1 Gene

Promoters and enhancers for GGTLC1 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH20I023986 Promoter 0.5 EPDnew 550.8 +1.9 1934 0.1 GGTLC1 ENSG00000236168
GH20I023988 Promoter 0.5 EPDnew 550.8 +0.2 166 0.1 GGTLC1 GC20M023990 GC20P023988 GC20P023994 PIR56142 POM121L3P PIR37244 PIR34408 GC20M023989 ENSG00000236168
GH20I024025 Enhancer 1 FANTOM5 Ensembl ENCODE 5.4 -38.4 -38377 2.5 JUN MAX MYC GABPA GGTLC1 PIR52234 GC20P023996
GH20I023980 Enhancer 0.5 Ensembl 5.6 +7.4 7378 1.6 ZFHX2 TFAP4 NFIA NFIB E4F1 SALL1 EGR2 ENSG00000236168 GGTLC1
GH20I024109 Enhancer 0.6 FANTOM5 ENCODE 2.4 -120.4 -120443 0.2 SP1 NFYC GGTLC1 LOC105372576 PIR52234
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around GGTLC1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for GGTLC1 Gene

Genomic Locations for GGTLC1 Gene
chr20:23,985,050-23,988,779
(GRCh38/hg38)
Size:
3,730 bases
Orientation:
Minus strand
chr20:23,965,690-23,969,416
(GRCh37/hg19)

Genomic View for GGTLC1 Gene

Genes around GGTLC1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
GGTLC1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GGTLC1 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for GGTLC1 Gene

Proteins for GGTLC1 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

  • Protein details for GGTLC1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q9BX51-GGTL1_HUMAN
    Recommended name:
    Glutathione hydrolase light chain 1
    Protein Accession:
    Q9BX51
    Secondary Accessions:
    • D3DW43
    • Q08246

    Protein attributes for GGTLC1 Gene

    Size:
    225 amino acids
    Molecular mass:
    24274 Da
    Quaternary structure:
    No Data Available
    Miscellaneous:
    • Corresponds to the light chain of other gamma-glutamyltransferase family members. Has no catalytic activity.

neXtProt entry for GGTLC1 Gene

Selected DME Specific Peptides for GGTLC1 Gene

Q9BX51:
  • PGKQPLSSMCP
  • ATSTINLYFGSKV
  • DDGGTAHLS
  • PSPANFI

Post-translational modifications for GGTLC1 Gene

No Post-translational modifications

Other Protein References for GGTLC1 Gene

ENSEMBL proteins:
REFSEQ proteins:

Domains & Families for GGTLC1 Gene

Gene Families for GGTLC1 Gene

HGNC:
Human Protein Atlas (HPA):
  • Predicted intracellular proteins

Protein Domains for GGTLC1 Gene

InterPro:
ProtoNet:

Suggested Antigen Peptide Sequences for GGTLC1 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q9BX51

UniProtKB/Swiss-Prot:

GGTL1_HUMAN :
  • Belongs to the gamma-glutamyltransferase family.
Family:
  • Belongs to the gamma-glutamyltransferase family.
genes like me logo Genes that share domains with GGTLC1: view

Function for GGTLC1 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Enzyme Numbers (IUBMB) for GGTLC1 Gene

Phenotypes From GWAS Catalog for GGTLC1 Gene

Gene Ontology (GO) - Molecular Function for GGTLC1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003674 molecular_function ND --
GO:0036374 glutathione hydrolase activity IEA --
genes like me logo Genes that share ontologies with GGTLC1: view
genes like me logo Genes that share phenotypes with GGTLC1: view

Animal Model Products

CRISPR Products

Inhibitory RNA Products

Clone Products

No data available for Molecular function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GGTLC1 Gene

Localization for GGTLC1 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for GGTLC1 gene
Compartment Confidence
plasma membrane 3
nucleus 2
cytosol 2
extracellular 1

Gene Ontology (GO) - Cellular Components for GGTLC1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005575 cellular_component ND --
genes like me logo Genes that share ontologies with GGTLC1: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Subcellular locations from the Human Protein Atlas (HPA) for GGTLC1 Gene

Pathways & Interactions for GGTLC1 Gene

genes like me logo Genes that share pathways with GGTLC1: view

Pathways by source for GGTLC1 Gene

Interacting Proteins for GGTLC1 Gene

STRING Interaction Network Preview (showing 5 interactants - click image to see 25)
http://version10.5.string-db.org/api/image/networkList?limit=0&targetmode=proteins&caller_identity=gene_cards&network_flavor=evidence&identifiers=9606.ENSP00000278765%0d%0a9606.ENSP00000265162%0d%0a9606.ENSP00000414330%0d%0a9606.ENSP00000350136%0d%0a9606.ENSP00000400376%0d%0a9606.ENSP00000270357%0d%0a
Selected Interacting proteins: ENSP00000278765 Q9BX51-GGTL1_HUMAN for GGTLC1 Gene via STRING IID

Gene Ontology (GO) - Biological Process for GGTLC1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006508 proteolysis IEA --
GO:0006751 glutathione catabolic process IEA --
GO:0008150 biological_process ND --
GO:1901750 leukotriene D4 biosynthetic process ISS --
genes like me logo Genes that share ontologies with GGTLC1: view

No data available for SIGNOR curated interactions for GGTLC1 Gene

Drugs & Compounds for GGTLC1 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for GGTLC1 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

mRNA/cDNA for GGTLC1 Gene

(10) REFSEQ mRNAs :
(3) Additional mRNA sequences :
(10) Selected AceView cDNA sequences:
(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for GGTLC1 Gene

Gamma-glutamyltransferase light chain 1:
Representative Sequences:

CRISPR Products

Inhibitory RNA Products

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for GGTLC1 Gene

No ASD Table

Relevant External Links for GGTLC1 Gene

GeneLoc Exon Structure for
GGTLC1
ECgene alternative splicing isoforms for
GGTLC1

Expression for GGTLC1 Gene

Products:

  1. Primer

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for GGTLC1 Gene

mRNA expression in normal human tissues for GGTLC1 Gene
mRNA expression by GTEx for GGTLC1 GenemRNA expression by BioGPS for GGTLC1 Gene

mRNA differential expression in normal tissues according to GTEx for GGTLC1 Gene

This gene is overexpressed in Lung (x30.3) and Testis (x19.4).

NURSA nuclear receptor signaling pathways regulating expression of GGTLC1 Gene:

GGTLC1

SOURCE GeneReport for Unigene cluster for GGTLC1 Gene:

Hs.355394

Evidence on tissue expression from TISSUES for GGTLC1 Gene

  • Lung(4.2)
  • Nervous system(4)
  • Kidney(2.3)
genes like me logo Genes that share expression patterns with GGTLC1: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt and Phenotype-based relationships between genes and organs from Gene ORGANizer for GGTLC1 Gene

Orthologs for GGTLC1 Gene

This gene was present in the common ancestor of eukaryotes.

Orthologs for GGTLC1 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
 Mammalia GGTLC1 33 34
  • 98.67 (n)
platypus
(Ornithorhynchus anatinus)
 Mammalia -- 34
  • 69 (a)
 ManyToMany
-- 34
  • 1 (a)
 ManyToMany
dog
(Canis familiaris)
 Mammalia -- 34
  • 33 (a)
 OneToMany
cow
(Bos Taurus)
 Mammalia -- 34
  • 32 (a)
 OneToMany
mouse
(Mus musculus)
 Mammalia Ggt1 34
  • 30 (a)
 OneToMany
oppossum
(Monodelphis domestica)
 Mammalia -- 34
OneToMany
chicken
(Gallus gallus)
 Aves -- 34
  • 26 (a)
 OneToMany
lizard
(Anolis carolinensis)
 Reptilia -- 34
  • 25 (a)
 OneToMany
zebrafish
(Danio rerio)
 Actinopterygii ggt1a 34
  • 25 (a)
 ManyToMany
ggt1b 34
  • 22 (a)
 ManyToMany
ggt1l2.2 34
  • 17 (a)
 ManyToMany
si:dkey-222h21.12 34
  • 17 (a)
 ManyToMany
si:ch73-236c18.3 34
  • 16 (a)
 ManyToMany
ggt1l2.1 34
  • 15 (a)
 ManyToMany
fruit fly
(Drosophila melanogaster)
 Insecta CG1492 34
  • 14 (a)
 ManyToMany
CG4829 34
  • 11 (a)
 ManyToMany
worm
(Caenorhabditis elegans)
 Secernentea C53D5.5 34
  • 17 (a)
 ManyToMany
Y7A9A.1 34
  • 15 (a)
 ManyToMany
H14N18.4 34
  • 14 (a)
 ManyToMany
T03D8.6 34
  • 12 (a)
 ManyToMany
baker's yeast
(Saccharomyces cerevisiae)
 Saccharomycetes ECM38 34
  • 12 (a)
 OneToMany
soybean
(Glycine max)
 eudicotyledons Gma.14319 33
sea squirt
(Ciona savignyi)
 Ascidiacea -- 34
  • 23 (a)
 ManyToMany
CSA.7538 34
  • 20 (a)
 ManyToMany
Species where no ortholog for GGTLC1 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)

Evolution for GGTLC1 Gene

ENSEMBL:
Gene Tree for GGTLC1 (if available)
TreeFam:
Gene Tree for GGTLC1 (if available)

Paralogs for GGTLC1 Gene

Paralogs for GGTLC1 Gene

(6) SIMAP similar genes for GGTLC1 Gene using alignment to 1 proteins:

genes like me logo Genes that share paralogs with GGTLC1: view

Variants for GGTLC1 Gene

Sequence variations from dbSNP and Humsavar for GGTLC1 Gene

SNP ID Clin Chr 20 pos Variation AA Info Type
rs1000132813 -- 23,984,607(-) C/T downstream_transcript_variant
rs1000467372 -- 23,988,655(-) A/T 5_prime_UTR_variant, genic_upstream_transcript_variant, upstream_transcript_variant
rs1000813768 -- 23,988,900(-) C/G/T 5_prime_UTR_variant, genic_upstream_transcript_variant, upstream_transcript_variant
rs1001420836 -- 23,987,855(-) C/T genic_upstream_transcript_variant, intron_variant, upstream_transcript_variant
rs1001871991 -- 23,987,631(-) G/A genic_upstream_transcript_variant, intron_variant, upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for GGTLC1 Gene

Variant ID Type Subtype PubMed ID
nsv833944 CNV gain 17160897
nsv953004 CNV deletion 24416366
nsv962565 CNV duplication 23825009
nsv962566 CNV duplication 23825009
nsv9793 CNV gain+loss 18304495
nsv979449 CNV duplication 23825009
nsv820636 CNV deletion 20802225
nsv522873 CNV gain 19592680
nsv1063474 CNV loss 25217958
esv3645541 CNV loss 21293372
esv2673741 CNV deletion 23128226
esv26651 CNV gain 19812545

Variation tolerance for GGTLC1 Gene

Residual Variation Intolerance Score: 82.7% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 2.68; 46.11% of all genes are more intolerant (likely to be disease-causing)

Additional Variant Information for GGTLC1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
GGTLC1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for GGTLC1 Gene

Disorders for GGTLC1 Gene

Additional Disease Information for GGTLC1

ATLAS of Genetics and Cytogenetics in Oncology and Haematology

No disorders were found for GGTLC1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for GGTLC1 Gene

Publications for GGTLC1 Gene

  1. The human gamma-glutamyltransferase gene family. (PMID: 18357469) Heisterkamp N … Sneddon TP (Human genetics 2008) 2 3 4 58
  2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard DS … MGC Project Team (Genome research 2004) 3 4 58
  3. The DNA sequence and comparative analysis of human chromosome 20. (PMID: 11780052) Deloukas P … Rogers J (Nature 2001) 3 4 58
  4. Molecular characterization of human acetyl-CoA synthetase, an enzyme regulated by sterol regulatory element-binding proteins. (PMID: 10843999) Luong A … Goldstein JL (The Journal of biological chemistry 2000) 2 3 58
  5. Human lung expresses unique gamma-glutamyl transpeptidase transcripts. (PMID: 7689219) Wetmore LA … Drazen JM (Proceedings of the National Academy of Sciences of the United States of America 1993) 3 4 58

Products for GGTLC1 Gene

Sources for GGTLC1 Gene

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