Aliases for GCSHP5 Gene

Aliases for GCSHP5 Gene

  • Glycine Cleavage System Protein H Pseudogene 5 2 3 5
  • Glycine Cleavage System Protein H (Aminomethyl Carrier) Pseudogene 3

External Ids for GCSHP5 Gene

Previous GeneCards Identifiers for GCSHP5 Gene

  • GC01M168026

Summaries for GCSHP5 Gene

GeneCards Summary for GCSHP5 Gene

GCSHP5 (Glycine Cleavage System Protein H Pseudogene 5) is a Pseudogene.

Additional gene information for GCSHP5 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for GCSHP5 Gene

Genomics for GCSHP5 Gene

GeneHancer (GH) Regulatory Elements for GCSHP5 Gene

Promoters and enhancers for GCSHP5 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J168058 Enhancer 0.6 Ensembl 500.7 -1.6 -1608 0.2 FOS ATF2 CEBPG CEBPB JUN FOSL1 JUND ZNF384 ZBTB40 ATF3 GCSHP5 SFT2D2 RF00017-388 DCAF6
GH01J168056 Promoter 0.4 Ensembl 500.7 +0.1 92 0.4 AGO2 GCSHP5 MPC2 lnc-GPR161-3 DCAF6
GH01J168053 Enhancer 0.3 Ensembl 0.7 +2.4 2392 1 SPI1 GCSHP5 lnc-GPR161-3 DCAF6
GH01J168031 Enhancer 0.4 Ensembl 0.4 +24.5 24492 1.6 EGR1 SPI1 RBM22 lnc-GPR161-3 ENSG00000232194 ENSG00000250762 GPR161 ADCY10 GCSHP5 DCAF6
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around GCSHP5 on UCSC Golden Path with GeneCards custom track

Genomic Locations for GCSHP5 Gene

Genomic Locations for GCSHP5 Gene
chr1:168,055,359-168,056,493
(GRCh38/hg38)
Size:
1,135 bases
Orientation:
Minus strand
chr1:168,024,597-168,025,731
(GRCh37/hg19)
Size:
1,135 bases
Orientation:
Minus strand

Genomic View for GCSHP5 Gene

Genes around GCSHP5 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
GCSHP5 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GCSHP5 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for GCSHP5 Gene

Proteins for GCSHP5 Gene

Post-translational modifications for GCSHP5 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GCSHP5 Gene

Domains & Families for GCSHP5 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for GCSHP5 Gene

Function for GCSHP5 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GCSHP5 Gene

Localization for GCSHP5 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for GCSHP5 Gene

Pathways & Interactions for GCSHP5 Gene

PathCards logo

SuperPathways for GCSHP5 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for GCSHP5 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for GCSHP5 Gene

Drugs & Compounds for GCSHP5 Gene

No Compound Related Data Available

Transcripts for GCSHP5 Gene

mRNA/cDNA for GCSHP5 Gene

1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for GCSHP5 Gene

No ASD Table

Relevant External Links for GCSHP5 Gene

GeneLoc Exon Structure for
GCSHP5

Expression for GCSHP5 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for GCSHP5 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for GCSHP5

genes like me logo Genes that share expression patterns with GCSHP5: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GCSHP5 Gene

Orthologs for GCSHP5 Gene

Evolution for GCSHP5 Gene

ENSEMBL:
Gene Tree for GCSHP5 (if available)
TreeFam:
Gene Tree for GCSHP5 (if available)

No data available for Orthologs for GCSHP5 Gene

Paralogs for GCSHP5 Gene

No data available for Paralogs for GCSHP5 Gene

Variants for GCSHP5 Gene

Additional Variant Information for GCSHP5 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
GCSHP5

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for GCSHP5 Gene

Disorders for GCSHP5 Gene

No disorders were found for GCSHP5 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GCSHP5 Gene

Publications for GCSHP5 Gene

  1. Transcriptome analysis of human gastric cancer. (PMID: 16341674) Oh JH … Kim NS (Mammalian genome : official journal of the International Mammalian Genome Society 2005) 3 54

Products for GCSHP5 Gene

Sources for GCSHP5 Gene