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Aliases for GCSHP3 Gene

Aliases for GCSHP3 Gene

  • Glycine Cleavage System Protein H Pseudogene 3 2 3 5
  • Glycine Cleavage System Protein H (Aminomethyl Carrier) Pseudogene 3 2 3

External Ids for GCSHP3 Gene

Previous GeneCards Identifiers for GCSHP3 Gene

  • GC02M206984
  • GC02M206990
  • GC02M206995

Summaries for GCSHP3 Gene

GeneCards Summary for GCSHP3 Gene

GCSHP3 (Glycine Cleavage System Protein H Pseudogene 3) is a Pseudogene.

Additional gene information for GCSHP3 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for GCSHP3 Gene

Genomics for GCSHP3 Gene

GeneHancer (GH) Regulatory Elements for GCSHP3 Gene

Promoters and enhancers for GCSHP3 Gene
GeneHancer (GH) Identifier GH Type GH
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH02J206081 Promoter/Enhancer 2.4 EPDnew Ensembl ENCODE dbSUPER 12.1 +32.1 32134 6.7 FOXA2 MLX ARID4B SIN3A DMAP1 ZNF2 YY1 POLR2B ZNF207 ZNF143 ENSG00000227946 INO80D ZDBF2 NDUFS1 GCSHP3 ENSG00000231955 SNORA41 SNORD51 EEF1B2 GPR1
GH02J206157 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 11.4 -43.1 -43077 3.7 PKNOX1 FOXA2 MLX ZFP64 ARID4B SIN3A DMAP1 IRF4 YY1 SLC30A9 NDUFS1 EEF1B2 ENSG00000277502 GC02P206176 GC02P206178 INO80D GCSHP3 ENSG00000231955 ENSG00000227946 KLF7-IT1
GH02J206078 Enhancer 0.7 ENCODE dbSUPER 11.2 +36.9 36922 1.7 SP1 SOX13 SP5 POLR2A KAT7 TEAD3 NDUFS1 GCSHP3 ENSG00000231955 EEF1B2 SNORA41 SNORD51 ENSG00000225610 GPR1 ENSG00000227946 INO80D
GH02J206077 Enhancer 0.7 ENCODE dbSUPER 11.2 +38.6 38591 0.7 FOXA2 NFIA TEAD1 FOXA3 CEBPA ZNF384 GCSHP3 ENSG00000231955 SNORA41 SNORD51 EEF1B2 NDUFS1 ENSG00000225610 ENSG00000227946 INO80D RPL27P8
GH02J205982 Enhancer 0.5 ENCODE 10.1 +132.8 132780 2.3 ZNF316 HMBOX1 MLLT1 MAFK NDUFS1 ENSG00000231955 GCSHP3 ENSG00000225216 NRP2 ENSG00000225610 PPIAP68
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around GCSHP3 on UCSC Golden Path with GeneCards custom track

Genomic Locations for GCSHP3 Gene

Genomic Locations for GCSHP3 Gene
1,000 bases
Minus strand
1,000 bases
Minus strand

Genomic View for GCSHP3 Gene

Genes around GCSHP3 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
GCSHP3 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GCSHP3 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for GCSHP3 Gene

Function for GCSHP3 Gene

Phenotypes From GWAS Catalog for GCSHP3 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GCSHP3 Gene

Localization for GCSHP3 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for GCSHP3 Gene

Pathways & Interactions for GCSHP3 Gene

SuperPathways for GCSHP3 Gene

No Data Available

Interacting Proteins for GCSHP3 Gene

Gene Ontology (GO) - Biological Process for GCSHP3 Gene


No data available for Pathways by source and SIGNOR curated interactions for GCSHP3 Gene

Drugs & Compounds for GCSHP3 Gene

No Compound Related Data Available

Transcripts for GCSHP3 Gene

mRNA/cDNA for GCSHP3 Gene

(2) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for GCSHP3 Gene

Glycine cleavage system protein H (aminomethyl carrier) pseudogene 3:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for GCSHP3 Gene

No ASD Table

Relevant External Links for GCSHP3 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for GCSHP3 Gene

NURSA nuclear receptor signaling pathways regulating expression of GCSHP3 Gene:


SOURCE GeneReport for Unigene cluster for GCSHP3 Gene:

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GCSHP3 Gene

Orthologs for GCSHP3 Gene

Evolution for GCSHP3 Gene

Gene Tree for GCSHP3 (if available)
Gene Tree for GCSHP3 (if available)

No data available for Orthologs for GCSHP3 Gene

Paralogs for GCSHP3 Gene

No data available for Paralogs for GCSHP3 Gene

Variants for GCSHP3 Gene

Sequence variations from dbSNP and Humsavar for GCSHP3 Gene

SNP ID Clin Chr 02 pos Variation AA Info Type
rs1000820671 -- 206,117,243(-) A/G upstream_transcript_variant
rs1000931587 -- 206,117,468(-) T/C upstream_transcript_variant
rs1001707625 -- 206,115,358(-) G/C downstream_transcript_variant
rs1002957156 -- 206,115,210(-) T/C downstream_transcript_variant
rs1008276074 -- 206,117,160(-) C/T upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for GCSHP3 Gene

Variant ID Type Subtype PubMed ID
esv3893538 CNV loss 25118596
nsv979170 CNV duplication 23825009

Additional Variant Information for GCSHP3 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for GCSHP3 Gene

Disorders for GCSHP3 Gene

Additional Disease Information for GCSHP3

No disorders were found for GCSHP3 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for GCSHP3 Gene

Publications for GCSHP3 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 58
  2. Normalization and subtraction: two approaches to facilitate gene discovery. (PMID: 8889548) Bonaldo MF … Soares MB (Genome research 1996) 3 58

Products for GCSHP3 Gene

Sources for GCSHP3 Gene

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