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Aliases for GCSAML-AS1 Gene

Subcategory (RNA class) for GCSAML-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

2

Aliases for GCSAML-AS1 Gene

  • GCSAML Antisense RNA 1 2 3

External Ids for GCSAML-AS1 Gene

Previous GeneCards Identifiers for GCSAML-AS1 Gene

  • GC01M247689

Summaries for GCSAML-AS1 Gene

GeneCards Summary for GCSAML-AS1 Gene

GCSAML-AS1 (GCSAML Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for GCSAML-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for GCSAML-AS1 Gene

Genomics for GCSAML-AS1 Gene

GeneHancer (GH) Regulatory Elements for GCSAML-AS1 Gene

Promoters and enhancers for GCSAML-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01I247530 Enhancer 0.5 Ensembl 554.9 +0.0 3 0.4 KLF1 L3MBTL2 GTF2A2 ZFX MGA GCSAML-AS1 OR2C3 GCSAML
GH01I247475 Enhancer 0.5 ENCODE 8 +54.2 54156 1.5 AFF1 NR2F1 IKZF1 SPI1 GCSAML-AS1 OR2W5 OR2B11
GH01I247424 Enhancer 0.4 dbSUPER 5.1 +104.4 104446 2.8 GATA3 DPF2 OR2B11 GCSAML-AS1 NLRP3 PIR61874
GH01I248434 Enhancer 0.4 dbSUPER 5 -905.2 -905166 3.5 ZNF687 MLLT1 OR2T7 GCSAML-AS1 OR2C3 OR2T1
GH01I247518 Promoter 0.8 EPDnew 0.4 +12.4 12367 0.1 ATF1 L3MBTL2 NRF1 ZFX MGA GCSAML GCSAML-AS1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around GCSAML-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for GCSAML-AS1 Gene

Genomic Locations for GCSAML-AS1 Gene
chr1:247,524,679-247,530,804
(GRCh38/hg38)
Size:
6,126 bases
Orientation:
Minus strand
chr1:247,687,981-247,694,106
(GRCh37/hg19)

Genomic View for GCSAML-AS1 Gene

Genes around GCSAML-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
GCSAML-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GCSAML-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for GCSAML-AS1 Gene

Proteins for GCSAML-AS1 Gene

Post-translational modifications for GCSAML-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GCSAML-AS1 Gene

Domains & Families for GCSAML-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GCSAML-AS1 Gene

Function for GCSAML-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GCSAML-AS1 Gene

Localization for GCSAML-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for GCSAML-AS1 Gene

Pathways & Interactions for GCSAML-AS1 Gene

SuperPathways for GCSAML-AS1 Gene

No Data Available

Interacting Proteins for GCSAML-AS1 Gene

Gene Ontology (GO) - Biological Process for GCSAML-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GCSAML-AS1 Gene

Drugs & Compounds for GCSAML-AS1 Gene

No Compound Related Data Available

Transcripts for GCSAML-AS1 Gene

mRNA/cDNA for GCSAML-AS1 Gene

(3) Additional mRNA sequences :

Unigene Clusters for GCSAML-AS1 Gene

GCSAML antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for GCSAML-AS1 Gene

No ASD Table

Relevant External Links for GCSAML-AS1 Gene

GeneLoc Exon Structure for
GCSAML-AS1
ECgene alternative splicing isoforms for
GCSAML-AS1

Expression for GCSAML-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for GCSAML-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for GCSAML-AS1 Gene

This gene is overexpressed in Testis (x10.5).

SOURCE GeneReport for Unigene cluster for GCSAML-AS1 Gene:

Hs.23491
genes like me logo Genes that share expression patterns with GCSAML-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GCSAML-AS1 Gene

Orthologs for GCSAML-AS1 Gene

No data available for Orthologs and Evolution for GCSAML-AS1 Gene

Paralogs for GCSAML-AS1 Gene

No data available for Paralogs for GCSAML-AS1 Gene

Variants for GCSAML-AS1 Gene

Sequence variations from dbSNP and Humsavar for GCSAML-AS1 Gene

SNP ID Clin Chr 01 pos Variation AA Info Type
rs1000005905 -- 247,531,025(-) G/C upstream_transcript_variant
rs1000236980 -- 247,524,698(-) T/G non_coding_transcript_variant
rs1000610833 -- 247,526,153(-) T/G intron_variant
rs1001275832 -- 247,529,735(-) T/G intron_variant
rs1001845824 -- 247,525,730(-) CTGCT/CT non_coding_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for GCSAML-AS1 Gene

Variant ID Type Subtype PubMed ID
esv33129 CNV gain+loss 17666407
esv3589518 CNV loss 21293372

Additional Variant Information for GCSAML-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
GCSAML-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for GCSAML-AS1 Gene

Disorders for GCSAML-AS1 Gene

Additional Disease Information for GCSAML-AS1

No disorders were found for GCSAML-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for GCSAML-AS1 Gene

Publications for GCSAML-AS1 Gene

  1. Germline genomic variants associated with childhood acute lymphoblastic leukemia. (PMID: 19684603) Treviño LR … Relling MV (Nature genetics 2009) 3 58
  2. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 58
  3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 58
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58

Products for GCSAML-AS1 Gene

Sources for GCSAML-AS1 Gene

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