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Aliases for GCSAML-AS1 Gene

Subcategory (RNA class) for GCSAML-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for GCSAML-AS1 Gene

  • GCSAML Antisense RNA 1 2 3 5
  • Olfactory Receptor OR1-30 4
  • Olfactory Receptor 2C4 4
  • Olfactory Receptor 2C5 4
  • OR2C5P 4
  • OR2C4 4

External Ids for GCSAML-AS1 Gene

Previous GeneCards Identifiers for GCSAML-AS1 Gene

  • GC01M247689

Summaries for GCSAML-AS1 Gene

GeneCards Summary for GCSAML-AS1 Gene

GCSAML-AS1 (GCSAML Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class. An important paralog of this gene is OR2C3.

UniProtKB/Swiss-Prot for GCSAML-AS1 Gene

  • Odorant receptor.

Additional gene information for GCSAML-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for GCSAML-AS1 Gene

Genomics for GCSAML-AS1 Gene

GeneHancer (GH) Regulatory Elements for GCSAML-AS1 Gene

Promoters and enhancers for GCSAML-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J247530 Enhancer 0.5 Ensembl 654.9 +1.8 1812 0.4 KLF1 L3MBTL2 GTF2A2 ZFX MGA GCSAML-AS1 OR2C3 GCSAML
GH01J247475 Enhancer 0.5 ENCODE 8 +56.0 55965 1.5 AFF1 NR2F1 IKZF1 SPI1 GCSAML-AS1 OR2W5 OR2B11
GH01J247424 Enhancer 0.4 dbSUPER 5.1 +106.3 106255 2.8 GATA3 DPF2 OR2B11 GCSAML-AS1 NLRP3 PIR61874
GH01J248434 Enhancer 0.4 dbSUPER 5 -903.4 -903357 3.5 ZNF687 MLLT1 OR2T7 GCSAML-AS1 OR2C3 OR2T1
GH01J247507 Promoter 0.5 EPDnew 0.3 +25.5 25508 0.1 GCSAML GCSAML-AS1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around GCSAML-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for GCSAML-AS1 Gene

Genomic Locations for GCSAML-AS1 Gene
chr1:247,524,679-247,532,613
(GRCh38/hg38)
Size:
7,935 bases
Orientation:
Minus strand
chr1:247,687,981-247,694,106
(GRCh37/hg19)
Size:
6,126 bases
Orientation:
Minus strand

Genomic View for GCSAML-AS1 Gene

Genes around GCSAML-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
GCSAML-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GCSAML-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for GCSAML-AS1 Gene

Proteins for GCSAML-AS1 Gene

  • Protein details for GCSAML-AS1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q8N628-OR2C3_HUMAN
    Recommended name:
    Olfactory receptor 2C3
    Protein Accession:
    Q8N628
    Secondary Accessions:
    • Q5JQS4
    • Q6IEZ1
    • Q8NGW7
    • Q5JQS4
    • Q6IEZ1
    • Q8NGW7

    Protein attributes for GCSAML-AS1 Gene

    Size:
    320 amino acids
    Molecular mass:
    35376 Da
    Quaternary structure:
    No Data Available
    SequenceCaution:
    • Sequence=AAH30717.1; Type=Erroneous initiation; Evidence={ECO:0000305}; Sequence=DAA04869.1; Type=Erroneous initiation; Evidence={ECO:0000305};
    • Sequence=AAH30717.1; Type=Erroneous initiation; Evidence={ECO:0000305}; Sequence=DAA04869.1; Type=Erroneous initiation; Evidence={ECO:0000305};

neXtProt entry for GCSAML-AS1 Gene

Post-translational modifications for GCSAML-AS1 Gene

Other Protein References for GCSAML-AS1 Gene

ENSEMBL proteins:

No data available for DME Specific Peptides for GCSAML-AS1 Gene

Domains & Families for GCSAML-AS1 Gene

Protein Domains for GCSAML-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

Q8N628

UniProtKB/Swiss-Prot:

OR2C3_HUMAN :
  • Belongs to the G-protein coupled receptor 1 family.
Family:
  • Belongs to the G-protein coupled receptor 1 family.
genes like me logo Genes that share domains with GCSAML-AS1: view

No data available for Gene Families and Suggested Antigen Peptide Sequences for GCSAML-AS1 Gene

Function for GCSAML-AS1 Gene

Molecular function for GCSAML-AS1 Gene

UniProtKB/Swiss-Prot Function:
Odorant receptor.

Gene Ontology (GO) - Molecular Function for GCSAML-AS1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0004930 G-protein coupled receptor activity IEA --
GO:0004984 olfactory receptor activity IBA --
genes like me logo Genes that share ontologies with GCSAML-AS1: view

Animal Model Products

No data available for Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GCSAML-AS1 Gene

Localization for GCSAML-AS1 Gene

Subcellular locations from UniProtKB/Swiss-Prot for GCSAML-AS1 Gene

Cell membrane; Multi-pass membrane protein.

Gene Ontology (GO) - Cellular Components for GCSAML-AS1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005886 plasma membrane TAS --
GO:0016020 membrane IEA --
GO:0016021 integral component of membrane IBA --
genes like me logo Genes that share ontologies with GCSAML-AS1: view

No data available for Subcellular locations from COMPARTMENTS and Subcellular locations from the Human Protein Atlas (HPA) for GCSAML-AS1 Gene

Pathways & Interactions for GCSAML-AS1 Gene

SuperPathways for GCSAML-AS1 Gene

No Data Available

Interacting Proteins for GCSAML-AS1 Gene

Gene Ontology (GO) - Biological Process for GCSAML-AS1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0007165 signal transduction IEA --
GO:0007186 G-protein coupled receptor signaling pathway IBA --
GO:0007608 sensory perception of smell IBA --
GO:0050896 response to stimulus IEA --
GO:0050911 detection of chemical stimulus involved in sensory perception of smell IEA --
genes like me logo Genes that share ontologies with GCSAML-AS1: view

No data available for Pathways by source and SIGNOR curated interactions for GCSAML-AS1 Gene

Drugs & Compounds for GCSAML-AS1 Gene

No Compound Related Data Available

Transcripts for GCSAML-AS1 Gene

mRNA/cDNA for GCSAML-AS1 Gene

(3) Additional mRNA sequences :
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :
(1) RNA Central transcripts :

Unigene Clusters for GCSAML-AS1 Gene

GCSAML antisense RNA 1:
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for GCSAML-AS1 Gene

No ASD Table

Relevant External Links for GCSAML-AS1 Gene

GeneLoc Exon Structure for
GCSAML-AS1
ECgene alternative splicing isoforms for
GCSAML-AS1

Expression for GCSAML-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for GCSAML-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for GCSAML-AS1 Gene

This gene is overexpressed in Testis (x10.5).

SOURCE GeneReport for Unigene cluster for GCSAML-AS1 Gene:

Hs.23491
genes like me logo Genes that share expression patterns with GCSAML-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GCSAML-AS1 Gene

Orthologs for GCSAML-AS1 Gene

Evolution for GCSAML-AS1 Gene

ENSEMBL:
Gene Tree for GCSAML-AS1 (if available)
TreeFam:
Gene Tree for GCSAML-AS1 (if available)

No data available for Orthologs for GCSAML-AS1 Gene

Paralogs for GCSAML-AS1 Gene

Paralogs for GCSAML-AS1 Gene

genes like me logo Genes that share paralogs with GCSAML-AS1: view

Variants for GCSAML-AS1 Gene

Sequence variations from dbSNP and Humsavar for GCSAML-AS1 Gene

SNP ID Clin Chr 01 pos Variation AA Info Type
rs1000005905 -- 247,531,025(-) G/C upstream_transcript_variant
rs1000236980 -- 247,524,698(-) T/G non_coding_transcript_variant
rs1000610833 -- 247,526,153(-) T/G intron_variant
rs1001275832 -- 247,529,735(-) T/G intron_variant
rs1001845824 -- 247,525,730(-) CTGCT/CT non_coding_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for GCSAML-AS1 Gene

Variant ID Type Subtype PubMed ID
esv3589518 CNV loss 21293372
esv33129 CNV gain+loss 17666407

Additional Variant Information for GCSAML-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
GCSAML-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for GCSAML-AS1 Gene

Disorders for GCSAML-AS1 Gene

Additional Disease Information for GCSAML-AS1

No disorders were found for GCSAML-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for GCSAML-AS1 Gene

Publications for GCSAML-AS1 Gene

  1. Germline genomic variants associated with childhood acute lymphoblastic leukemia. (PMID: 19684603) Treviño LR … Relling MV (Nature genetics 2009) 3 58
  2. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 58
  3. The DNA sequence and biological annotation of human chromosome 1. (PMID: 16710414) Gregory SG … Prigmore E (Nature 2006) 4 58
  4. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 58
  5. The human olfactory receptor gene family. (PMID: 14983052) Malnic B … Buck LB (Proceedings of the National Academy of Sciences of the United States of America 2004) 4 58

Products for GCSAML-AS1 Gene

Sources for GCSAML-AS1 Gene

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