Aliases for GCSAML-AS1 Gene

Subcategory (RNA class) for GCSAML-AS1 Gene

lncRNA

Number of RNA Genes sources:

3 / 14

Aliases for GCSAML-AS1 Gene

  • GCSAML Antisense RNA 1 2 3 5
  • GCSAML-AS1 2 168
  • HSALNG0012265 167
  • NONHSAG004925 92

External Ids for GCSAML-AS1 Gene

Previous GeneCards Identifiers for GCSAML-AS1 Gene

  • GC01M247689

Summaries for GCSAML-AS1 Gene

GeneCards Summary for GCSAML-AS1 Gene

GCSAML-AS1 (GCSAML Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class. An important paralog of this gene is OR2C3.

Additional gene information for GCSAML-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for GCSAML-AS1 Gene

Genomics for GCSAML-AS1 Gene

GeneHancer (GH) Regulatory Elements for GCSAML-AS1 Gene

Promoters and enhancers for GCSAML-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J247530 Promoter 1.1 Ensembl CraniofacialAtlas 510.8 +1.7 1713 0.6 POLR2G GTF2A2 YY1 PCBP1 KLF1 L3MBTL2 MAX ZFX RNF2 RBFOX2 GCSAML-AS1 OR2C3 piR-55648-010 lnc-OR2G2-1 GCSAML
GH01J247494 Enhancer 0.7 Ensembl ENCODE 11.1 +38.0 38012 3.2 NFIC SPI1 FOSL1 STAT3 NFIB NFE2 CEBPB LCORL BHLHE40 SMAD1 OR2B11 OR2G2 OR2C3 GCSAML-AS1 OR2G3 ENSG00000235749 ENSG00000236817 ZNF496 GCSAML OR2W5
GH01J247486 Enhancer 0.6 Ensembl 10.5 +45.3 45312 0.6 CTCF REST RAD21 TRIM22 SMC3 SMARCA5 ZNF654 MAX IKZF1 YY1 OR2W5 OR2B11 OR2C3 OR2G2 ZNF496 GCSAML-AS1
GH01J247475 Enhancer 0.6 Ensembl ENCODE 8 +56.0 55965 1.5 AFF1 IKZF1 NR2F1 SPI1 GCSAML-AS1 OR2W5 OR2B11
GH01J247472 Enhancer 0.3 Ensembl 10.3 +58.9 58912 1.8 POU5F1 NANOG GCSAML-AS1 GCSAML OR2W5 OR2B11
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around GCSAML-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for GCSAML-AS1 Gene

Genomic Locations for GCSAML-AS1 Gene
chr1:247,524,679-247,532,613
(GRCh38/hg38)
Size:
7,935 bases
Orientation:
Minus strand
chr1:247,687,981-247,694,106
(GRCh37/hg19)
Size:
6,126 bases
Orientation:
Minus strand

Genomic View for GCSAML-AS1 Gene

Genes around GCSAML-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
GCSAML-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GCSAML-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for GCSAML-AS1 Gene

Proteins for GCSAML-AS1 Gene

Post-translational modifications for GCSAML-AS1 Gene

No Post-translational modifications

Other Protein References for GCSAML-AS1 Gene

ENSEMBL proteins:

No data available for DME Specific Peptides for GCSAML-AS1 Gene

Domains & Families for GCSAML-AS1 Gene

Gene Families for GCSAML-AS1 Gene

Human Protein Atlas (HPA):
  • G-protein coupled receptors
  • Predicted membrane proteins
genes like me logo Genes that share domains with GCSAML-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for GCSAML-AS1 Gene

Function for GCSAML-AS1 Gene

Phenotypes From GWAS Catalog for GCSAML-AS1 Gene

Gene Ontology (GO) - Molecular Function for GCSAML-AS1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0004984 olfactory receptor activity IEA --
genes like me logo Genes that share ontologies with GCSAML-AS1: view

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GCSAML-AS1 Gene

Localization for GCSAML-AS1 Gene

Subcellular locations from the

Human Protein Atlas (HPA)
  • Plasma membrane (1)
See all subcellular structures

Gene Ontology (GO) - Cellular Components for GCSAML-AS1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0016021 integral component of membrane IEA --
genes like me logo Genes that share ontologies with GCSAML-AS1: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Subcellular locations from COMPARTMENTS for GCSAML-AS1 Gene

Pathways & Interactions for GCSAML-AS1 Gene

PathCards logo

SuperPathways for GCSAML-AS1 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for GCSAML-AS1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0007186 G protein-coupled receptor signaling pathway IEA --
genes like me logo Genes that share ontologies with GCSAML-AS1: view

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for GCSAML-AS1 Gene

Drugs & Compounds for GCSAML-AS1 Gene

No Compound Related Data Available

Transcripts for GCSAML-AS1 Gene

mRNA/cDNA for GCSAML-AS1 Gene

4 RNACentral transcripts :
1 REFSEQ mRNAs :
3 NCBI additional mRNA sequence :
2 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
3 NONCODE transcripts :
3 LncBook transcripts :
2 LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for GCSAML-AS1 Gene

No ASD Table

Relevant External Links for GCSAML-AS1 Gene

GeneLoc Exon Structure for
GCSAML-AS1

Expression for GCSAML-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for GCSAML-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for GCSAML-AS1 Gene

This gene is overexpressed in Testis (x10.5).

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for GCSAML-AS1

SOURCE GeneReport for Unigene cluster for GCSAML-AS1 Gene:

Hs.23491
genes like me logo Genes that share expression patterns with GCSAML-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GCSAML-AS1 Gene

Orthologs for GCSAML-AS1 Gene

Evolution for GCSAML-AS1 Gene

ENSEMBL:
Gene Tree for GCSAML-AS1 (if available)
TreeFam:
Gene Tree for GCSAML-AS1 (if available)

No data available for Orthologs for GCSAML-AS1 Gene

Paralogs for GCSAML-AS1 Gene

genes like me logo Genes that share paralogs with GCSAML-AS1: view

Variants for GCSAML-AS1 Gene

Additional dbSNP identifiers (rs#s) for GCSAML-AS1 Gene

Structural Variations from Database of Genomic Variants (DGV) for GCSAML-AS1 Gene

Variant ID Type Subtype PubMed ID
esv33129 CNV gain+loss 17666407
esv3589518 CNV loss 21293372

Additional Variant Information for GCSAML-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
GCSAML-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for GCSAML-AS1 Gene

Disorders for GCSAML-AS1 Gene

Additional Disease Information for GCSAML-AS1

No disorders were found for GCSAML-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for GCSAML-AS1 Gene

Publications for GCSAML-AS1 Gene

  1. Germline genomic variants associated with childhood acute lymphoblastic leukemia. (PMID: 19684603) Treviño LR … Relling MV (Nature genetics 2009) 3 54
  2. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 54
  3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 54
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 54

Products for GCSAML-AS1 Gene

Sources for GCSAML-AS1 Gene