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Aliases for GCNT2P Gene

Aliases for GCNT2P Gene

  • GCNT2 Pseudogene 2 3
  • Glucosaminyl (N-Acetyl) Transferase 6 2 3 5
  • GCNT6 3 5
  • Beta-1,3-Galactosyl-O-Glycosyl-Glycoprotein Beta-1,6-N-Acetylglucosaminyltransferase 6 3
  • Glucosaminyl (N-Acetyl) Transferase 2, I-Branching Enzyme (I Blood Group) Pseudogene 3

External Ids for GCNT2P Gene

Previous HGNC Symbols for GCNT2P Gene

  • GCNT6

Summaries for GCNT2P Gene

GeneCards Summary for GCNT2P Gene

GCNT2P (GCNT2 Pseudogene) is a Pseudogene. Among its related pathways are Metabolism of proteins and O-linked glycosylation.

Additional gene information for GCNT2P Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for GCNT2P Gene

Genomics for GCNT2P Gene

GeneHancer (GH) Regulatory Elements for GCNT2P Gene

Promoters and enhancers for GCNT2P Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH06I010632 Enhancer 0.9 Ensembl ENCODE 550.8 -0.3 -294 1.2 HDAC1 TEAD4 JUN MAX FOSL1 CTBP1 ZNF316 VEZF1 TRIM24 ETV6 GCNT2P PIR63050
GH06I010554 Promoter/Enhancer 1.9 EPDnew Ensembl ENCODE dbSUPER 12 -77.1 -77068 4.5 MEIS2 MXI1 PKNOX1 JUN MAX ZNF76 SIN3A YY1 ETS1 ZNF335 GCNT2 GCNT2P C6orf52 PAK1IP1 SYCP2L ENSG00000235051 GCM2 GC06M010576 LOC101928146
GH06I010595 Enhancer 1.3 FANTOM5 Ensembl ENCODE dbSUPER 12.5 -36.4 -36361 4 NCOA3 MEIS2 SOX6 HLF CEBPB ZMYM3 FOXA1 ZNF121 ZNF217 CTBP1 GCNT2P PAK1IP1 C6orf52 GCNT2 ELOVL2 RPL21P63 PIR63050
GH06I010565 Enhancer 0.8 ENCODE dbSUPER 12.1 -66.7 -66662 3.6 TEAD1 HLF ZNF7 TEAD3 ZNF707 HNF1A POLR2A IKZF1 TCF7 NR2F6 GCNT2P C6orf52 PAK1IP1 GC06M010576 LOC101928146 GCNT2
GH06I010559 Enhancer 0.7 Ensembl ENCODE dbSUPER 12.1 -74.3 -74269 0.9 MXI1 GCNT2P C6orf52 PAK1IP1 GC06M010576 LOC101928146 GCNT2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around GCNT2P on UCSC Golden Path with GeneCards custom track

Genomic Locations for GCNT2P Gene

Genomic Locations for GCNT2P Gene
chr6:10,633,762-10,634,695
(GRCh38/hg38)
Size:
934 bases
Orientation:
Plus strand
chr6:10,633,993-10,647,501
(GRCh37/hg19)

Genomic View for GCNT2P Gene

Genes around GCNT2P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
GCNT2P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GCNT2P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for GCNT2P Gene

Proteins for GCNT2P Gene

Post-translational modifications for GCNT2P Gene

No Post-translational modifications

No data available for DME Specific Peptides for GCNT2P Gene

Domains & Families for GCNT2P Gene

Suggested Antigen Peptide Sequences for GCNT2P Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with GCNT2P: view

No data available for Protein Domains and UniProtKB/Swiss-Prot for GCNT2P Gene

Function for GCNT2P Gene

Gene Ontology (GO) - Molecular Function for GCNT2P Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0008375 acetylglucosaminyltransferase activity IEA --
genes like me logo Genes that share ontologies with GCNT2P: view

Phenotypes for GCNT2P Gene

GenomeRNAi human phenotypes for GCNT2P:
genes like me logo Genes that share phenotypes with GCNT2P: view

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GCNT2P Gene

Localization for GCNT2P Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for GCNT2P gene
Compartment Confidence
golgi apparatus 4
extracellular 3
endoplasmic reticulum 1

Gene Ontology (GO) - Cellular Components for GCNT2P Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0000139 Golgi membrane IEA --
GO:0016021 integral component of membrane IEA --
genes like me logo Genes that share ontologies with GCNT2P: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Subcellular locations from the Human Protein Atlas (HPA) for GCNT2P Gene

Pathways & Interactions for GCNT2P Gene

genes like me logo Genes that share pathways with GCNT2P: view

Interacting Proteins for GCNT2P Gene

Gene Ontology (GO) - Biological Process for GCNT2P Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006486 protein glycosylation IEA --
genes like me logo Genes that share ontologies with GCNT2P: view

No data available for SIGNOR curated interactions for GCNT2P Gene

Drugs & Compounds for GCNT2P Gene

No Compound Related Data Available

Transcripts for GCNT2P Gene

mRNA/cDNA for GCNT2P Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for GCNT2P Gene

No ASD Table

Relevant External Links for GCNT2P Gene

GeneLoc Exon Structure for
GCNT2P
ECgene alternative splicing isoforms for
GCNT2P

Expression for GCNT2P Gene

NURSA nuclear receptor signaling pathways regulating expression of GCNT2P Gene:

GCNT2P
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GCNT2P Gene

Orthologs for GCNT2P Gene

This gene was present in the common ancestor of animals.

Orthologs for GCNT2P Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia GCNT6 34
  • 95 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia -- 34
  • 59 (a)
OneToMany
cow
(Bos Taurus)
Mammalia GCNT2 34
  • 46 (a)
ManyToMany
chicken
(Gallus gallus)
Aves -- 34
  • 39 (a)
OneToMany
lizard
(Anolis carolinensis)
Reptilia -- 34
  • 36 (a)
OneToMany
worm
(Caenorhabditis elegans)
Secernentea gly-17 34
  • 19 (a)
ManyToMany
gly-16 34
  • 18 (a)
ManyToMany
gly-18 34
  • 18 (a)
ManyToMany
gly-19 34
  • 18 (a)
ManyToMany
gly-15 34
  • 17 (a)
ManyToMany
gly-1 34
  • 15 (a)
ManyToMany
F26D2.3 34
  • 14 (a)
ManyToMany
F35H8.2 34
  • 14 (a)
ManyToMany
R07C3.3 34
  • 13 (a)
ManyToMany
T09E11.9 34
  • 13 (a)
ManyToMany
T14B4.9 34
  • 13 (a)
ManyToMany
T27F6.1 34
  • 13 (a)
ManyToMany
ZK1225.2 34
  • 13 (a)
ManyToMany
R07B7.6 34
  • 12 (a)
ManyToMany
T09E11.6 34
  • 12 (a)
ManyToMany
H41C03.3 34
  • 11 (a)
ManyToMany
T28F3.9 34
  • 11 (a)
ManyToMany
Y51H4A.25 34
  • 11 (a)
ManyToMany
F30A10.4 34
  • 10 (a)
ManyToMany
Species where no ortholog for GCNT2P was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • zebrafish (Danio rerio)

Evolution for GCNT2P Gene

ENSEMBL:
Gene Tree for GCNT2P (if available)
TreeFam:
Gene Tree for GCNT2P (if available)

Paralogs for GCNT2P Gene

No data available for Paralogs for GCNT2P Gene

Variants for GCNT2P Gene

Sequence variations from dbSNP and Humsavar for GCNT2P Gene

SNP ID Clin Chr 06 pos Variation AA Info Type
rs9885719 -- p.Pro316Leu

Variation tolerance for GCNT2P Gene

Gene Damage Index Score: 4.20; 61.98% of all genes are more intolerant (likely to be disease-causing)

Additional Variant Information for GCNT2P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
GCNT2P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Structural Variations from Database of Genomic Variants (DGV) for GCNT2P Gene

Disorders for GCNT2P Gene

No disorders were found for GCNT2P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GCNT2P Gene

Publications for GCNT2P Gene

  1. Panorama of ancient metazoan macromolecular complexes. (PMID: 26344197) Wan C … Emili A (Nature 2015) 3 58

Products for GCNT2P Gene

Sources for GCNT2P Gene

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