Aliases for GCNT1P3 Gene

Aliases for GCNT1P3 Gene

  • Glucosaminyl (N-Acetyl) Transferase 1 Pseudogene 3 2 3 5
  • Glucosaminyl (N-Acetyl) Transferase 1, Core 2 Pseudogene 3 2 3

External Ids for GCNT1P3 Gene

Previous GeneCards Identifiers for GCNT1P3 Gene

  • GC00U930844
  • GC03U901566
  • GC03P187742
  • GC03P190343

Summaries for GCNT1P3 Gene

GeneCards Summary for GCNT1P3 Gene

GCNT1P3 (Glucosaminyl (N-Acetyl) Transferase 1 Pseudogene 3) is a Pseudogene.

Additional gene information for GCNT1P3 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for GCNT1P3 Gene

Genomics for GCNT1P3 Gene

GeneHancer (GH) Regulatory Elements for GCNT1P3 Gene

Promoters and enhancers for GCNT1P3 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH03J190616 Promoter/Enhancer 1.5 FANTOM5 Ensembl ENCODE dbSUPER 0.4 -6.8 -6834 3.3 EP300 FOXK2 NCOR1 RFX1 SKI FOXA2 CTCF SAP130 SPI1 BMI1 IL1RAP GCNT1P3 lnc-CLDN16-7 HSALNG0031565
GH03J190584 Enhancer 1.2 Ensembl ENCODE dbSUPER 0.3 -37.1 -37094 5.8 ZNF217 EP300 JUND TEAD4 FOS ZNF639 ZNF10 CLOCK RFX1 CUX1 IL1RAP HSALNG0031565 GCNT1P3 lnc-CLDN16-7
GH03J190565 Enhancer 1.3 Ensembl ENCODE dbSUPER 0.2 -57.7 -57722 3.1 EP300 FOXK2 TCF12 NCOR1 JUND FOS ZNF639 REST TCF7 TRIM28 IL1RAP HSALNG0031565 lnc-CLDN16-7 GCNT1P3
GH03J190594 Enhancer 0.7 Ensembl ENCODE dbSUPER 0.3 -28.2 -28193 3.7 ZFP64 HNF4A GATAD2A IL1RAP GCNT1P3 lnc-CLDN16-7 HSALNG0031565
GH03J190580 Enhancer 0.7 Ensembl 0.3 -43.5 -43495 1.8 NCOR1 TBX3 FOXA2 CEBPB SAP130 GATA3 FOS JUND BCL6 HOMEZ HSALNG0031565 lnc-CLDN16-7 GCNT1P3 IL1RAP
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around GCNT1P3 on UCSC Golden Path with GeneCards custom track

Genomic Locations for GCNT1P3 Gene

Genomic Locations for GCNT1P3 Gene
chr3:190,624,595-190,625,169
(GRCh38/hg38)
Size:
575 bases
Orientation:
Plus strand
chr3:190,342,384-190,342,958
(GRCh37/hg19)
Size:
575 bases
Orientation:
Plus strand

Genomic View for GCNT1P3 Gene

Genes around GCNT1P3 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
GCNT1P3 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GCNT1P3 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for GCNT1P3 Gene

Proteins for GCNT1P3 Gene

Post-translational modifications for GCNT1P3 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GCNT1P3 Gene

Domains & Families for GCNT1P3 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for GCNT1P3 Gene

Function for GCNT1P3 Gene

Phenotypes From GWAS Catalog for GCNT1P3 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GCNT1P3 Gene

Localization for GCNT1P3 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for GCNT1P3 Gene

Pathways & Interactions for GCNT1P3 Gene

PathCards logo

SuperPathways for GCNT1P3 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for GCNT1P3 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for GCNT1P3 Gene

Drugs & Compounds for GCNT1P3 Gene

No Compound Related Data Available

Transcripts for GCNT1P3 Gene

mRNA/cDNA for GCNT1P3 Gene

1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for GCNT1P3 Gene

No ASD Table

Relevant External Links for GCNT1P3 Gene

GeneLoc Exon Structure for
GCNT1P3

Expression for GCNT1P3 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for GCNT1P3 Gene

mRNA differential expression in normal tissues according to GTEx for GCNT1P3 Gene

This gene is overexpressed in Liver (x12.2) and Whole Blood (x7.0).
genes like me logo Genes that share expression patterns with GCNT1P3: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GCNT1P3 Gene

Orthologs for GCNT1P3 Gene

Evolution for GCNT1P3 Gene

ENSEMBL:
Gene Tree for GCNT1P3 (if available)
TreeFam:
Gene Tree for GCNT1P3 (if available)

No data available for Orthologs for GCNT1P3 Gene

Paralogs for GCNT1P3 Gene

No data available for Paralogs for GCNT1P3 Gene

Variants for GCNT1P3 Gene

Additional Variant Information for GCNT1P3 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
GCNT1P3

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for GCNT1P3 Gene

Disorders for GCNT1P3 Gene

No disorders were found for GCNT1P3 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GCNT1P3 Gene

Publications for GCNT1P3 Gene

No publications were found for GCNT1P3 Gene.

Products for GCNT1P3 Gene

Sources for GCNT1P3 Gene