Aliases for GCNT1P1 Gene

Aliases for GCNT1P1 Gene

  • Glucosaminyl (N-Acetyl) Transferase 1 Pseudogene 1 2 3 5
  • Glucosaminyl (N-Acetyl) Transferase 1, Core 2 (Beta-1,6-N-Acetylglucosaminyltransferase) Pseudogene 2 3
  • Glucosaminyl (N-Acetyl) Transferase 1, Core 2 Pseudogene 1 2 3
  • BA189K21.2 3
  • GCNT1P 3

External Ids for GCNT1P1 Gene

Previous HGNC Symbols for GCNT1P1 Gene

  • GCNT1P

Summaries for GCNT1P1 Gene

GeneCards Summary for GCNT1P1 Gene

GCNT1P1 (Glucosaminyl (N-Acetyl) Transferase 1 Pseudogene 1) is a Pseudogene.

Additional gene information for GCNT1P1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for GCNT1P1 Gene

Genomics for GCNT1P1 Gene

GeneHancer (GH) Regulatory Elements for GCNT1P1 Gene

Promoters and enhancers for GCNT1P1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH20J018421 Enhancer 0.3 Ensembl 500.7 -0.1 -73 0.2 ZIC2 TCF12 GCNT1P1 POLR3F DZANK1 RNA5SP476
GH20J018465 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE CraniofacialAtlas 12.7 -45.6 -45571 3.2 EP300 ZNF217 SIN3A NRF1 MYC TCF12 POLR2G NCOR1 PHF8 SIX5 DZANK1 POLR3F piR-38605-006 SNX5 ENSG00000230495 GCNT1P1 ZNF133 LINC00652 RRBP1 DTD1
GH20J018287 Promoter/Enhancer 2 EPDnew Ensembl ENCODE CraniofacialAtlas 7.9 +133.0 133027 3.2 ZBTB40 ZNF217 EP300 SIN3A TCF12 POLR2G SP1 PHF8 SIX5 ZFX ZNF133 lnc-DZANK1-3-002 ENSG00000237259 DZANK1 POLR3F GCNT1P1 RN7SKP74 lnc-DZANK1-5 lnc-DZANK1-3-001 ENSG00000230010
GH20J018394 Enhancer 0.4 Ensembl 23.3 +25.3 25327 4.2 NFIC SPI1 ZNF704 NFIB PRDM1 GCNT1P1 DZANK1 POLR3F SMIM26 LINC00851
GH20J017556 Promoter/Enhancer 2.1 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 4.6 +861.3 861341 8.2 EP300 ZNF217 TCF12 POLR2G JUND FOS ZIC2 POLR2A RFX1 CUX1 BFSP1 RRBP1 DSTN GCNT1P1 ENSG00000277373 RF01045-080
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around GCNT1P1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for GCNT1P1 Gene

Genomic Locations for GCNT1P1 Gene
chr20:18,419,977-18,421,628
(GRCh38/hg38)
Size:
1,652 bases
Orientation:
Minus strand
chr20:18,400,621-18,402,272
(GRCh37/hg19)
Size:
1,652 bases
Orientation:
Minus strand

Genomic View for GCNT1P1 Gene

Genes around GCNT1P1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
GCNT1P1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GCNT1P1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for GCNT1P1 Gene

Proteins for GCNT1P1 Gene

Post-translational modifications for GCNT1P1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GCNT1P1 Gene

Domains & Families for GCNT1P1 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for GCNT1P1 Gene

Function for GCNT1P1 Gene

Phenotypes From GWAS Catalog for GCNT1P1 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GCNT1P1 Gene

Localization for GCNT1P1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for GCNT1P1 Gene

Pathways & Interactions for GCNT1P1 Gene

PathCards logo

SuperPathways for GCNT1P1 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for GCNT1P1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for GCNT1P1 Gene

Drugs & Compounds for GCNT1P1 Gene

No Compound Related Data Available

Transcripts for GCNT1P1 Gene

mRNA/cDNA for GCNT1P1 Gene

1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for GCNT1P1 Gene

No ASD Table

Relevant External Links for GCNT1P1 Gene

GeneLoc Exon Structure for
GCNT1P1

Expression for GCNT1P1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for GCNT1P1 Gene

mRNA differential expression in normal tissues according to GTEx for GCNT1P1 Gene

This gene is overexpressed in Pituitary (x5.2).
genes like me logo Genes that share expression patterns with GCNT1P1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GCNT1P1 Gene

Orthologs for GCNT1P1 Gene

Evolution for GCNT1P1 Gene

ENSEMBL:
Gene Tree for GCNT1P1 (if available)
TreeFam:
Gene Tree for GCNT1P1 (if available)

No data available for Orthologs for GCNT1P1 Gene

Paralogs for GCNT1P1 Gene

No data available for Paralogs for GCNT1P1 Gene

Variants for GCNT1P1 Gene

Additional Variant Information for GCNT1P1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
GCNT1P1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for GCNT1P1 Gene

Disorders for GCNT1P1 Gene

No disorders were found for GCNT1P1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GCNT1P1 Gene

Publications for GCNT1P1 Gene

  1. Isolation and characterization of a pseudogene related to human core 2 beta-1,6-N-acetylglucosaminyl-transferase. (PMID: 8748164) Bierhuizen MF … Fukuda M (Glycoconjugate journal 1995) 3 54

Products for GCNT1P1 Gene

Sources for GCNT1P1 Gene