Aliases for GCC2-AS1 Gene

Subcategory (RNA class) for GCC2-AS1 Gene

lncRNA

Number of RNA Genes sources:

3 / 14

Aliases for GCC2-AS1 Gene

  • GCC2 Antisense RNA 1 2 3 5
  • GCC2-AS1 2 168
  • NONHSAG028882 92
  • HSALNG0017733 167

External Ids for GCC2-AS1 Gene

Previous GeneCards Identifiers for GCC2-AS1 Gene

  • GC02M108498

Summaries for GCC2-AS1 Gene

GeneCards Summary for GCC2-AS1 Gene

GCC2-AS1 (GCC2 Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for GCC2-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for GCC2-AS1 Gene

Genomics for GCC2-AS1 Gene

GeneHancer (GH) Regulatory Elements for GCC2-AS1 Gene

Promoters and enhancers for GCC2-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH02J108532 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 500.7 -1.4 -1365 6 EP300 FOXK2 ZNF217 ZSCAN5C SIN3A NRF1 POLR2G NCOR1 GTF2E2 PHF8 GCC2-AS1 LIMS1 GCC2 RANBP2 SULT1C4 RGPD4 lnc-LIMS1-1 LIMS3-LOC440895
GH02J108978 Enhancer 0.7 Ensembl 4.1 -446.3 -446281 5 TCF12 ZIC2 ZBTB25 TEAD1 FOXA2 JUND ZFHX2 GATA3 FOXP1 FOXA1 GCC2-AS1 piR-31839 EDAR piR-61060 LIMS3-LOC440895
GH02J108524 Enhancer 0.6 Ensembl 0.4 +8.8 8819 0.8 ZBTB5 SPI1 ZFP91 DPF2 SMARCE1 GABPB1 KDM1A ZNF366 ZNF596 SP1 piR-32623-002 piR-56133-123 GCC2 GCC2-AS1
GH02J108491 Enhancer 0.9 Ensembl ENCODE 0.3 +42.1 42099 2.2 TCF12 JUND FOS SKI TEAD1 ZNF316 MAFF ZKSCAN1 SAP130 FOSL2 GCC2 SULT1C4 lnc-EDAR-10 piR-31199-174 GCC2-AS1
GH02J108514 Enhancer 0.2 Ensembl 0.4 +19.2 19218 1.6 piR-48722-005 piR-58996-004 GCC2 SULT1C4 piR-49060-005 GCC2-AS1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around GCC2-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for GCC2-AS1 Gene

Genomic Locations for GCC2-AS1 Gene
chr2:108,468,246-108,534,219
(GRCh38/hg38)
Size:
65,974 bases
Orientation:
Minus strand
chr2:109,123,971-109,150,652
(GRCh37/hg19)
Size:
26,682 bases
Orientation:
Minus strand

Genomic View for GCC2-AS1 Gene

Genes around GCC2-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
GCC2-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GCC2-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for GCC2-AS1 Gene

Proteins for GCC2-AS1 Gene

Post-translational modifications for GCC2-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GCC2-AS1 Gene

Domains & Families for GCC2-AS1 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for GCC2-AS1 Gene

Function for GCC2-AS1 Gene

Phenotypes From GWAS Catalog for GCC2-AS1 Gene

Phenotypes for GCC2-AS1 Gene

genes like me logo Genes that share phenotypes with GCC2-AS1: view

Inhibitory RNA Products

  • Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for GCC2-AS1

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GCC2-AS1 Gene

Localization for GCC2-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for GCC2-AS1 Gene

Pathways & Interactions for GCC2-AS1 Gene

PathCards logo

SuperPathways for GCC2-AS1 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for GCC2-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for GCC2-AS1 Gene

Drugs & Compounds for GCC2-AS1 Gene

No Compound Related Data Available

Transcripts for GCC2-AS1 Gene

mRNA/cDNA for GCC2-AS1 Gene

13 RNACentral transcripts :
3 REFSEQ mRNAs :
2 NCBI additional mRNA sequence :
2 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
4 NONCODE transcripts :
3 LncBook transcripts :
11 LNCipedia transcripts :

Inhibitory RNA Products

  • Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for GCC2-AS1

Alternative Splicing Database (ASD) splice patterns (SP) for GCC2-AS1 Gene

No ASD Table

Relevant External Links for GCC2-AS1 Gene

GeneLoc Exon Structure for
GCC2-AS1

Expression for GCC2-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for GCC2-AS1 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for GCC2-AS1

genes like me logo Genes that share expression patterns with GCC2-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GCC2-AS1 Gene

Orthologs for GCC2-AS1 Gene

Evolution for GCC2-AS1 Gene

ENSEMBL:
Gene Tree for GCC2-AS1 (if available)
TreeFam:
Gene Tree for GCC2-AS1 (if available)

No data available for Orthologs for GCC2-AS1 Gene

Paralogs for GCC2-AS1 Gene

No data available for Paralogs for GCC2-AS1 Gene

Variants for GCC2-AS1 Gene

Additional dbSNP identifiers (rs#s) for GCC2-AS1 Gene

Additional Variant Information for GCC2-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
GCC2-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for GCC2-AS1 Gene

Disorders for GCC2-AS1 Gene

Additional Disease Information for GCC2-AS1

No disorders were found for GCC2-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for GCC2-AS1 Gene

Publications for GCC2-AS1 Gene

  1. A proteome-scale map of the human interactome network. (PMID: 25416956) Rolland T … Vidal M (Cell 2014) 3 54
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 54
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 54
  4. The sequence of the human genome. (PMID: 11181995) Venter JC … Zhu X (Science (New York, N.Y.) 2001) 3 54

Products for GCC2-AS1 Gene

Sources for GCC2-AS1 Gene