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Aliases for GCC2-AS1 Gene

Subcategory (RNA class) for GCC2-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for GCC2-AS1 Gene

  • GCC2 Antisense RNA 1 2 3 5

External Ids for GCC2-AS1 Gene

Summaries for GCC2-AS1 Gene

GeneCards Summary for GCC2-AS1 Gene

GCC2-AS1 (GCC2 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for GCC2-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for GCC2-AS1 Gene

Genomics for GCC2-AS1 Gene

GeneHancer (GH) Regulatory Elements for GCC2-AS1 Gene

Promoters and enhancers for GCC2-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH02I108532 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 550.8 -1.4 -1378 5.9 HDGF CLOCK FOXA2 ZFP64 ARID4B SIN3A DMAP1 YY1 POLR2B ZNF213 LIMS1 GCC2-AS1 GCC2 SULT1C4 RGPD4 GC02P108499 PIR40245
GH02I108531 Enhancer 0.6 Ensembl 0.8 +2.9 2918 0.2 ZNF687 ETV1 NR2F1 DPF2 HDAC2 IKZF1 NR2C1 MLLT1 NR2C2 GCC2 GCC2-AS1 GC02P108511 GC02P108499
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around GCC2-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for GCC2-AS1 Gene

Genomic Locations for GCC2-AS1 Gene
chr2:108,505,162-108,534,219
(GRCh38/hg38)
Size:
29,058 bases
Orientation:
Minus strand
chr2:109,123,971-109,150,652
(GRCh37/hg19)

Genomic View for GCC2-AS1 Gene

Genes around GCC2-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
GCC2-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GCC2-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for GCC2-AS1 Gene

Proteins for GCC2-AS1 Gene

Post-translational modifications for GCC2-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GCC2-AS1 Gene

Domains & Families for GCC2-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GCC2-AS1 Gene

Function for GCC2-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GCC2-AS1 Gene

Localization for GCC2-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for GCC2-AS1 Gene

Pathways & Interactions for GCC2-AS1 Gene

SuperPathways for GCC2-AS1 Gene

No Data Available

Interacting Proteins for GCC2-AS1 Gene

Gene Ontology (GO) - Biological Process for GCC2-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GCC2-AS1 Gene

Drugs & Compounds for GCC2-AS1 Gene

No Compound Related Data Available

Transcripts for GCC2-AS1 Gene

mRNA/cDNA for GCC2-AS1 Gene

(2) REFSEQ mRNAs :
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for GCC2-AS1 Gene

No ASD Table

Relevant External Links for GCC2-AS1 Gene

GeneLoc Exon Structure for
GCC2-AS1
ECgene alternative splicing isoforms for
GCC2-AS1

Expression for GCC2-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for GCC2-AS1 Gene

genes like me logo Genes that share expression patterns with GCC2-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GCC2-AS1 Gene

Orthologs for GCC2-AS1 Gene

Evolution for GCC2-AS1 Gene

ENSEMBL:
Gene Tree for GCC2-AS1 (if available)
TreeFam:
Gene Tree for GCC2-AS1 (if available)

No data available for Orthologs for GCC2-AS1 Gene

Paralogs for GCC2-AS1 Gene

No data available for Paralogs for GCC2-AS1 Gene

Variants for GCC2-AS1 Gene

Sequence variations from dbSNP and Humsavar for GCC2-AS1 Gene

SNP ID Clin Chr 02 pos Variation AA Info Type
rs1000151043 -- 108,509,959(-) A/G intron_variant
rs1000188020 -- 108,522,357(-) T/C intron_variant
rs1000311957 -- 108,514,119(-) A/G intron_variant
rs1000360573 -- 108,513,924(-) C/T intron_variant
rs1000360579 -- 108,532,961(-) C/T intron_variant

Additional Variant Information for GCC2-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
GCC2-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for GCC2-AS1 Gene

Disorders for GCC2-AS1 Gene

Additional Disease Information for GCC2-AS1

No disorders were found for GCC2-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for GCC2-AS1 Gene

Publications for GCC2-AS1 Gene

  1. A proteome-scale map of the human interactome network. (PMID: 25416956) Rolland T … Vidal M (Cell 2014) 3 58
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 58
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58
  4. The sequence of the human genome. (PMID: 11181995) Venter JC … Zhu X (Science (New York, N.Y.) 2001) 3 58

Products for GCC2-AS1 Gene

Sources for GCC2-AS1 Gene

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