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Aliases for GC22P029716 Gene

Subcategory (RNA class) for GC22P029716 Gene

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Quality Score for this RNA gene is

13.4

Aliases for GC22P029716 Gene

No Aliases found

ORGUL Members for GC22P029716 Gene

No data available for External Ids for GC22P029716 Gene

Summaries for GC22P029716 Gene

GeneCards Summary for GC22P029716 Gene

GC22P029716 is an RNA Gene, and is affiliated with the undefined RNA class.

fRNAdb sequence ontologies for GC22P029716 Gene

  • nc_conserved_region: Non-coding region of sequence similarity by descent from a common ancestor.

View fRNAdb secondary structures for GC22P029716

Additional gene information for GC22P029716 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for GC22P029716 Gene

Genomics for GC22P029716 Gene

GeneHancer (GH) Regulatory Elements for GC22P029716 Gene

Promoters and enhancers for GC22P029716 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH22J029716 Enhancer 1.1 ENCODE dbSUPER 600.7 +0.4 381 0.1 ELF3 CEBPG AHR TFE3 SP7 PPARG ZNF644 KAT8 HMG20B CEBPA GC22P029716 ENSG00000239446 ENSG00000232396
GH22J029700 Enhancer 1.5 FANTOM5 Ensembl ENCODE dbSUPER 0.4 -13.0 -13047 7 NFIB SP7 PPARG PRDM1 GLIS2 PKNOX1 ZNF600 PRDM10 ZIC2 REST THOC5 MTMR3 NF2 NEFH ASCC2 PIR62072 GC22P029716 ENSG00000232396
GH22J029712 Enhancer 0.5 dbSUPER 0.7 -3.9 -3908 0.7 PRDM1 ZBTB17 ZNF623 ZNF366 ZNF398 THOC5 GC22P029716 ENSG00000239446 ENSG00000232396 PIR62072
GH22J029710 Enhancer 0.7 ENCODE dbSUPER 0.4 -5.5 -5481 0.2 ZNF341 STAT1 STAT3 RCOR1 ENSG00000232396 GC22P029716 PIR62072
GH22J029697 Enhancer 0.3 dbSUPER 0.4 -18.2 -18158 1.5 HLF PIR62072 PIR32963 NIPSNAP1 THOC5 GC22P029716 NF2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around GC22P029716 on UCSC Golden Path with GeneCards custom track

Genomic Locations for GC22P029716 Gene

Genomic Locations for GC22P029716 Gene
chr22:29,716,548-29,716,687
(GRCh38/hg38)
Size:
140 bases
Orientation:
Plus strand

Genomic View for GC22P029716 Gene

Genes around GC22P029716 on UCSC Golden Path with GeneCards custom track

GC22P029716 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GC22P029716 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

ORGUL Member Location for GC22P029716 Gene

ORGUL Member Location for GC22P029716 gene

No data available for Cytogenetic band and RefSeq DNA sequence for GC22P029716 Gene

Proteins for GC22P029716 Gene

Post-translational modifications for GC22P029716 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GC22P029716 Gene

Domains & Families for GC22P029716 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GC22P029716 Gene

Function for GC22P029716 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GC22P029716 Gene

Localization for GC22P029716 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for GC22P029716 Gene

Pathways & Interactions for GC22P029716 Gene

PathCards logo

SuperPathways for GC22P029716 Gene

No Data Available

Interacting Proteins for GC22P029716 Gene

Gene Ontology (GO) - Biological Process for GC22P029716 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GC22P029716 Gene

Drugs & Compounds for GC22P029716 Gene

No Compound Related Data Available

Transcripts for GC22P029716 Gene

fRNAdb Secondary structures for GC22P029716 Gene

  • FR134753
  • FR037911

Alternative Splicing Database (ASD) splice patterns (SP) for GC22P029716 Gene

No ASD Table

Relevant External Links for GC22P029716 Gene

GeneLoc Exon Structure for
GC22P029716

No data available for mRNA/cDNA for GC22P029716 Gene

Expression for GC22P029716 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GC22P029716 Gene

Orthologs for GC22P029716 Gene

No data available for Orthologs and Evolution for GC22P029716 Gene

Paralogs for GC22P029716 Gene

No data available for Paralogs for GC22P029716 Gene

Variants for GC22P029716 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for GC22P029716 Gene

Disorders for GC22P029716 Gene

No disorders were found for GC22P029716 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GC22P029716 Gene

Publications for GC22P029716 Gene

  1. Identification and classification of conserved RNA secondary structures in the human genome. (PMID: 16628248) Pedersen JS … Haussler D (PLoS computational biology 2006) 1
  2. RNAdb--a comprehensive mammalian noncoding RNA database. (PMID: 15608161) Pang KC … Mattick JS (Nucleic acids research 2005) 1
  3. Mapping of conserved RNA secondary structures predicts thousands of functional noncoding RNAs in the human genome. (PMID: 16273071) Washietl S … Stadler PF (Nature biotechnology 2005) 1

No data available for External Links for GC22P029716 Gene

Products for GC22P029716 Gene

Sources for GC22P029716 Gene

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