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Aliases for GC22M042137 Gene

Subcategory (RNA class) for GC22M042137 Gene

snoRNA

Quality Score for this RNA gene is

14

Aliases for GC22M042137 Gene

No Aliases found

ORGUL Members for GC22M042137 Gene

No data available for External Ids for GC22M042137 Gene

Summaries for GC22M042137 Gene

GeneCards Summary for GC22M042137 Gene

GC22M042137 is an RNA Gene, and is affiliated with the snoRNA class.

fRNAdb sequence ontologies for GC22M042137 Gene

  • C_D_box_snoRNA: Most box C/D snoRNAs also contain long (>10 nt) sequences complementary to rRNA. Boxes C and D, as well as boxes C' and D', are usually located in close proximity, and form a structure known as the box C/D motif. This motif is important for snoRNA stability, processing, nucleolar targeting and function. A small number of box C/D snoRNAs are involved in rRNA processing; most, however, are known or predicted to serve as guide RNAs in ribose methylation of rRNA. Targeting involves direct base pairing of the snoRNA at the rRNA site to be modified and selection of a rRNA nucleotide a fixed distance from box D or D'.

Additional gene information for GC22M042137 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for GC22M042137 Gene

Genomics for GC22M042137 Gene

GeneHancer (GH) Regulatory Elements for GC22M042137 Gene

Promoters and enhancers for GC22M042137 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH22I039317 Enhancer 0.5 ENCODE 550.8 +0.8 786 0.2 CTCF GLIS2 POLR2A PATZ1 GC22M042039 GC22M042137 GC22M042366 GC22M042449 GC22M042589 PIR59759 SNORD83B SNORD83A RPL3
GH22I039313 Enhancer 0.5 ENCODE 550.8 +1.4 1366 0.2 GLIS2 POLR2A PATZ1 SUPT5H GC22M042039 GC22M042137 GC22M042366 GC22M042449 GC22M042589 PIR59759 SNORD83B SNORD83A RPL3
GH22I039318 Enhancer 0.5 ENCODE 550.8 +1.8 1776 0.2 GLIS2 RXRA POLR2A PATZ1 ZNF24 SUPT5H GC22M042039 GC22M042137 GC22M042366 GC22M042449 GC22M042589 PIR59759 SNORD83B SNORD83A RPL3 GC22P039299
GH22I039314 Enhancer 0.4 ENCODE 550.8 +1.0 1046 0.2 CTCF POLR2A GC22M042039 GC22M042137 GC22M042366 GC22M042449 GC22M042589 PIR59759 SNORD83A SNORD83B SYNGR1 PDGFB
GH22I039316 Enhancer 0.4 ENCODE 550.8 +0.4 366 0.2 GLIS2 POLR2A PATZ1 GC22M042039 GC22M042137 GC22M042168 GC22M042366 GC22M042449 GC22M042589 PIR59759 SNORD139 SNORD83A SNORD83B
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around GC22M042137 on UCSC Golden Path with GeneCards custom track

Genomic Locations for GC22M042137 Gene

Genomic Locations for GC22M042137 Gene
chr22:39,315,212-39,315,307
(GRCh38/hg38)
Size:
96 bases
Orientation:
Minus strand

Genomic View for GC22M042137 Gene

Genes around GC22M042137 on UCSC Golden Path with GeneCards custom track

GC22M042137 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GC22M042137 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for Cytogenetic band and RefSeq DNA sequence for GC22M042137 Gene

Proteins for GC22M042137 Gene

Post-translational modifications for GC22M042137 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GC22M042137 Gene

Domains & Families for GC22M042137 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GC22M042137 Gene

Function for GC22M042137 Gene

Animal Model Products

miRNA for GC22M042137 Gene

miRTarBase miRNAs that target GC22M042137

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for GC22M042137 Gene

Localization for GC22M042137 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for GC22M042137 Gene

Pathways & Interactions for GC22M042137 Gene

SuperPathways for GC22M042137 Gene

No Data Available

Interacting Proteins for GC22M042137 Gene

Gene Ontology (GO) - Biological Process for GC22M042137 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GC22M042137 Gene

Drugs & Compounds for GC22M042137 Gene

No Compound Related Data Available

Transcripts for GC22M042137 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for GC22M042137 Gene

No ASD Table

Relevant External Links for GC22M042137 Gene

GeneLoc Exon Structure for
GC22M042137

No data available for mRNA/cDNA for GC22M042137 Gene

Expression for GC22M042137 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GC22M042137 Gene

Orthologs for GC22M042137 Gene

No data available for Orthologs and Evolution for GC22M042137 Gene

Paralogs for GC22M042137 Gene

No data available for Paralogs for GC22M042137 Gene

Variants for GC22M042137 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for GC22M042137 Gene

Disorders for GC22M042137 Gene

No disorders were found for GC22M042137 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GC22M042137 Gene

Publications for GC22M042137 Gene

  1. snoRNA-LBME-db, a comprehensive database of human H/ACA and C/D box snoRNAs. (PMID: 16381836) Lestrade L … Weber MJ (Nucleic acids research 2006) 1
  2. NONCODE: an integrated knowledge database of non-coding RNAs. (PMID: 15608158) Liu C … Chen R (Nucleic acids research 2005) 1
  3. RNAdb--a comprehensive mammalian noncoding RNA database. (PMID: 15608161) Pang KC … Mattick JS (Nucleic acids research 2005) 1
  4. Characterisation of the U83 and U84 small nucleolar RNAs: two novel 2'-O-ribose methylation guide RNAs that lack complementarities to ribosomal RNAs. (PMID: 10684929) Jády BE … Kiss T (Nucleic acids research 2000) 1
  5. The intron-containing L3 ribosomal protein gene (RPL3): sequence analysis and identification of U43 and of two novel intronic small nucleolar RNAs. (PMID: 10684968) Duga S … Simonic T (Biochimica et biophysica acta 2000) 1

Products for GC22M042137 Gene

Sources for GC22M042137 Gene

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