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Aliases for GC22M027880 Gene

Subcategory (RNA class) for GC22M027880 Gene

lncRNA

Quality Score for this RNA gene is

13

Aliases for GC22M027880 Gene

No Aliases found

ORGUL Members for GC22M027880 Gene

No data available for External Ids for GC22M027880 Gene

Summaries for GC22M027880 Gene

GeneCards Summary for GC22M027880 Gene

GC22M027880 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for GC22M027880 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for GC22M027880 Gene

Genomics for GC22M027880 Gene

GeneHancer (GH) Regulatory Elements for GC22M027880 Gene

Promoters and enhancers for GC22M027880 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH22J027880 Enhancer 0.8 ENCODE dbSUPER 600.7 -1.4 -1402 4.2 CTCF SP1 MZF1 RAD21 CEBPA REST TRIM22 YY1 RFX5 HDGF GC22M027880 TTC28-AS1 PITPNB
GH22J027881 Enhancer 0.7 ENCODE dbSUPER 600.7 +0.9 892 0.2 CTCF TRIM22 RAD21 TEAD3 YY1 GC22M027880 PITPNB MN1
GH22J027917 Promoter/Enhancer 2.3 EPDnew FANTOM5 Ensembl ENCODE 0.3 -37.7 -37731 4.5 HDGF SP1 ZFX MNT ZNF148 NKRF POLR2A ZNF121 GTF2F1 ZNF687 TTC28-AS1 PITPNB MIR3199-2 MIR3199-1 ENSG00000277460 TTC28 GC22M027880
GH22J027863 Enhancer 1.6 FANTOM5 Ensembl ENCODE dbSUPER 0.4 +13.3 13300 9.6 ELF3 MLLT1 CEBPG SP7 SP1 HNF1A PRDM1 MZF1 IKZF1 CREB1 PITPNB TTC28-AS1 MN1 TTC28 GC22M027880
GH22J027885 Enhancer 1.2 Ensembl ENCODE dbSUPER 0.4 -5.2 -5208 2.6 CTCF SP7 RAD21 CREB1 PKNOX1 REST ZEB2 ZNF639 ATF7 ZNF629 PITPNB TTC28-AS1 ENSG00000272858 GC22M027880
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around GC22M027880 on UCSC Golden Path with GeneCards custom track

Genomic Locations for GC22M027880 Gene

Genomic Locations for GC22M027880 Gene
chr22:27,880,034-27,881,118
(GRCh38/hg38)
Size:
1,085 bases
Orientation:
Minus strand

Genomic View for GC22M027880 Gene

Genes around GC22M027880 on UCSC Golden Path with GeneCards custom track

GC22M027880 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GC22M027880 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for Cytogenetic band and RefSeq DNA sequence for GC22M027880 Gene

Proteins for GC22M027880 Gene

Post-translational modifications for GC22M027880 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GC22M027880 Gene

Domains & Families for GC22M027880 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GC22M027880 Gene

Function for GC22M027880 Gene

Phenotypes From GWAS Catalog for GC22M027880 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GC22M027880 Gene

Localization for GC22M027880 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for GC22M027880 Gene

Pathways & Interactions for GC22M027880 Gene

PathCards logo

SuperPathways for GC22M027880 Gene

No Data Available

Interacting Proteins for GC22M027880 Gene

Gene Ontology (GO) - Biological Process for GC22M027880 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GC22M027880 Gene

Drugs & Compounds for GC22M027880 Gene

No Compound Related Data Available

Transcripts for GC22M027880 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for GC22M027880 Gene

No ASD Table

Relevant External Links for GC22M027880 Gene

GeneLoc Exon Structure for
GC22M027880

No data available for mRNA/cDNA for GC22M027880 Gene

Expression for GC22M027880 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GC22M027880 Gene

Orthologs for GC22M027880 Gene

No data available for Orthologs and Evolution for GC22M027880 Gene

Paralogs for GC22M027880 Gene

No data available for Paralogs for GC22M027880 Gene

Variants for GC22M027880 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for GC22M027880 Gene

Disorders for GC22M027880 Gene

No disorders were found for GC22M027880 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GC22M027880 Gene

Publications for GC22M027880 Gene

No publications were found for GC22M027880 Gene.

No data available for External Links for GC22M027880 Gene

Products for GC22M027880 Gene

Sources for GC22M027880 Gene

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