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Aliases for GC21M034457 Gene

Subcategory (RNA class) for GC21M034457 Gene

snoRNA

Quality Score for this RNA gene is

15

Aliases for GC21M034457 Gene

No Aliases found

ORGUL Members for GC21M034457 Gene

No data available for External Ids for GC21M034457 Gene

Summaries for GC21M034457 Gene

GeneCards Summary for GC21M034457 Gene

GC21M034457 is an RNA Gene, and is affiliated with the snoRNA class.

fRNAdb sequence ontologies for GC21M034457 Gene

  • H_ACA_box_snoRNA: Members of the box H/ACA family contain an ACA triplet, exactly 3 nt upstream from the 3' end and an H-box in a hinge region that links two structurally similar functional domains of the molecule. Both boxes are important for snoRNA biosynthesis and function. A few box H/ACA snoRNAs are involved in rRNA processing; most others are known or predicted to participate in selection of uridine nucleosides in rRNA to be converted to pseudouridines. Site selection is mediated by direct base pairing of the snoRNA with rRNA through one or both targeting domains.

Additional gene information for GC21M034457 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for GC21M034457 Gene

Genomics for GC21M034457 Gene

GeneHancer (GH) Regulatory Elements for GC21M034457 Gene

Promoters and enhancers for GC21M034457 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH21J034455 Enhancer 0.5 ENCODE 650.7 +0.2 230 0.9 JUND L3MBTL2 JUN BHLHE40 MYC MGA ENSG00000221398 GC21M034457 SMIM34A KCNE1 SMIM11A LOC105372791 KCNE2 RCAN1 FAM243A ENSG00000272958
GH21J034459 Promoter 1.3 EPDnew Ensembl 0.7 -3.5 -3464 0.6 KLF1 SP3 SP5 TCF7 KCNE1 SMIM11A LOC105372791 KCNE2 SMIM34A RCAN1 FAM243A ENSG00000221398 GC21M034457
GH21J034509 Promoter/Enhancer 1.7 EPDnew Ensembl ENCODE dbSUPER 0.2 -55.5 -55484 3.8 PTBP1 PKNOX1 RB1 ARID4B YBX1 ZNF2 RAD21 YY1 EGR1 ZNF366 KCNE1 RCAN1 ENSG00000221398 GC21M034457
GH21J034482 Enhancer 1 Ensembl ENCODE 0.3 -27.2 -27169 1.8 ATF1 PKNOX1 ARNT ZBTB40 RAD21 CHAMP1 ZNF280A TCF12 FOS ATF7 KCNE1 ENSG00000221398 SMIM34A RCAN1 FAM243A LINC01426 GC21M034457
GH21J034443 Enhancer 0.7 ENCODE 0.4 +12.5 12519 0.2 CTCF RB1 CEBPG RAD21 TEAD3 ZNF335 ARID2 SMC3 ZNF143 ZNF654 RCAN1 FAM243A KCNE1 GC21M034457 ENSG00000221398 ENSG00000272958
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around GC21M034457 on UCSC Golden Path with GeneCards custom track

Genomic Locations for GC21M034457 Gene

Genomic Locations for GC21M034457 Gene
chr21:34,456,109-34,456,237
(GRCh38/hg38)
Size:
129 bases
Orientation:
Minus strand

Genomic View for GC21M034457 Gene

Genes around GC21M034457 on UCSC Golden Path with GeneCards custom track

GC21M034457 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GC21M034457 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for Cytogenetic band and RefSeq DNA sequence for GC21M034457 Gene

Proteins for GC21M034457 Gene

Post-translational modifications for GC21M034457 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GC21M034457 Gene

Domains & Families for GC21M034457 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GC21M034457 Gene

Function for GC21M034457 Gene

Phenotypes From GWAS Catalog for GC21M034457 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GC21M034457 Gene

Localization for GC21M034457 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for GC21M034457 Gene

Pathways & Interactions for GC21M034457 Gene

SuperPathways for GC21M034457 Gene

No Data Available

Interacting Proteins for GC21M034457 Gene

Gene Ontology (GO) - Biological Process for GC21M034457 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GC21M034457 Gene

Drugs & Compounds for GC21M034457 Gene

No Compound Related Data Available

Transcripts for GC21M034457 Gene

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for GC21M034457 Gene

No ASD Table

Relevant External Links for GC21M034457 Gene

GeneLoc Exon Structure for
GC21M034457

No data available for mRNA/cDNA for GC21M034457 Gene

Expression for GC21M034457 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GC21M034457 Gene

Orthologs for GC21M034457 Gene

No data available for Orthologs and Evolution for GC21M034457 Gene

Paralogs for GC21M034457 Gene

No data available for Paralogs for GC21M034457 Gene

Variants for GC21M034457 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for GC21M034457 Gene

Disorders for GC21M034457 Gene

No disorders were found for GC21M034457 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GC21M034457 Gene

Publications for GC21M034457 Gene

  1. snoRNA-LBME-db, a comprehensive database of human H/ACA and C/D box snoRNAs. (PMID: 16381836) Lestrade L … Weber MJ (Nucleic acids research 2006) 1
  2. A novel experimental approach for systematic identification of box H/ACA snoRNAs from eukaryotes. (PMID: 16361266) Gu AD … Qu LH (Nucleic acids research 2005) 1
  3. Human box H/ACA pseudouridylation guide RNA machinery. (PMID: 15199136) Kiss AM … Kiss T (Molecular and cellular biology 2004) 1

Products for GC21M034457 Gene

Sources for GC21M034457 Gene

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