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Aliases for GC21M032378 Gene

Subcategory (RNA class) for GC21M032378 Gene


Quality Score for this RNA gene is


Aliases for GC21M032378 Gene

No Aliases found

No data available for External Ids for GC21M032378 Gene

Summaries for GC21M032378 Gene

GeneCards Summary for GC21M032378 Gene

GC21M032378 is an RNA Gene, and is affiliated with the snoRNA class.

fRNAdb sequence ontologies for GC21M032378 Gene

  • H_ACA_box_snoRNA: Members of the box H/ACA family contain an ACA triplet, exactly 3 nt upstream from the 3' end and an H-box in a hinge region that links two structurally similar functional domains of the molecule. Both boxes are important for snoRNA biosynthesis and function. A few box H/ACA snoRNAs are involved in rRNA processing; most others are known or predicted to participate in selection of uridine nucleosides in rRNA to be converted to pseudouridines. Site selection is mediated by direct base pairing of the snoRNA with rRNA through one or both targeting domains.

View fRNAdb secondary structures for GC21M032378

Additional gene information for GC21M032378 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for GC21M032378 Gene

Genomics for GC21M032378 Gene

GeneHancer (GH) Regulatory Elements for GC21M032378 Gene

Promoters and enhancers for GC21M032378 Gene
GeneHancer (GH) Identifier GH Type GH
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH21J032377 Enhancer 0.8 ENCODE dbSUPER 0.7 -3.2 -3207 5.9 BCOR ZNF189 ZMYM3 ZIC2 SP1 ZNF664 JUND POLR2A HDAC2 GLIS1 URB1-AS1 GC21M032378 SNORA80A URB1
GH21J032370 Enhancer 1.2 Ensembl ENCODE dbSUPER 0.4 +5.4 5376 3 ZBTB21 JUN ZKSCAN1 ZNF335 SCRT2 FOS ZNF639 ZNF362 ZNF189 ZNF10 URB1-AS1 EVA1C PAXBP1 URB1 LOC105372779 ENSG00000238390 TCP10L SCAF4 GC21M032360 GC21M032378
GH21J032363 Enhancer 0.9 ENCODE dbSUPER 0.4 +12.8 12767 1.5 ELF3 SOX13 TFAP4 FOXA2 SAP130 ARID4B ERF RARA TEAD3 ZNF614 URB1-AS1 URB1 LOC105372779 ENSG00000252045 GC21M032360 GC21M032378 SNORA80A
GH21J032388 Enhancer 0.8 ENCODE dbSUPER 0.4 -12.2 -12231 1.6 NFIB ZBTB11 MNT ZEB2 ZNF48 ZIC2 ATF2 NFIC ZNF692 ZNF629 URB1-AS1 URB1 GC21M032378 SNORA80A
GH21J032386 Enhancer 0.7 ENCODE dbSUPER 0.4 -9.2 -9232 1.1 RXRA SCRT2 PRDM10 HNF4A URB1-AS1 URB1 GC21M032378 SNORA80A
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around GC21M032378 on UCSC Golden Path with GeneCards custom track

Genomic Locations for GC21M032378 Gene

Genomic Locations for GC21M032378 Gene
137 bases
Minus strand

Genomic View for GC21M032378 Gene

Genes around GC21M032378 on UCSC Golden Path with GeneCards custom track

GC21M032378 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GC21M032378 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

ORGUL Member Location for GC21M032378 Gene

ORGUL Member Location for GC21M032378 gene

No data available for Cytogenetic band and RefSeq DNA sequence for GC21M032378 Gene

Proteins for GC21M032378 Gene

Post-translational modifications for GC21M032378 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GC21M032378 Gene

Domains & Families for GC21M032378 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GC21M032378 Gene

Function for GC21M032378 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GC21M032378 Gene

Localization for GC21M032378 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for GC21M032378 Gene

Pathways & Interactions for GC21M032378 Gene

SuperPathways for GC21M032378 Gene

No Data Available

Interacting Proteins for GC21M032378 Gene

Gene Ontology (GO) - Biological Process for GC21M032378 Gene


No data available for Pathways by source and SIGNOR curated interactions for GC21M032378 Gene

Drugs & Compounds for GC21M032378 Gene

No Compound Related Data Available

Transcripts for GC21M032378 Gene

fRNAdb Secondary structures for GC21M032378 Gene

  • FR023622
  • FR130217

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for GC21M032378 Gene

No ASD Table

Relevant External Links for GC21M032378 Gene

GeneLoc Exon Structure for

No data available for mRNA/cDNA for GC21M032378 Gene

Expression for GC21M032378 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GC21M032378 Gene

Orthologs for GC21M032378 Gene

No data available for Orthologs and Evolution for GC21M032378 Gene

Paralogs for GC21M032378 Gene

No data available for Paralogs for GC21M032378 Gene

Variants for GC21M032378 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for GC21M032378 Gene

Disorders for GC21M032378 Gene

No disorders were found for GC21M032378 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GC21M032378 Gene

Publications for GC21M032378 Gene

  1. A computational screen for mammalian pseudouridylation guide H/ACA RNAs. (PMID: 16373490) Schattner P … Lowe TM (RNA (New York, N.Y.) 2006) 1
  2. snoRNA-LBME-db, a comprehensive database of human H/ACA and C/D box snoRNAs. (PMID: 16381836) Lestrade L … Weber MJ (Nucleic acids research 2006) 1
  3. RNAdb--a comprehensive mammalian noncoding RNA database. (PMID: 15608161) Pang KC … Mattick JS (Nucleic acids research 2005) 1
  4. Human box H/ACA pseudouridylation guide RNA machinery. (PMID: 15199136) Kiss AM … Kiss T (Molecular and cellular biology 2004) 1

Products for GC21M032378 Gene

Sources for GC21M032378 Gene

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