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Aliases for GC21M029186 Gene

Subcategory (RNA class) for GC21M029186 Gene

snoRNA

Quality Score for this RNA gene is

15

Aliases for GC21M029186 Gene

No Aliases found

No data available for External Ids for GC21M029186 Gene

Summaries for GC21M029186 Gene

GeneCards Summary for GC21M029186 Gene

GC21M029186 is an RNA Gene, and is affiliated with the snoRNA class.

fRNAdb sequence ontologies for GC21M029186 Gene

  • U3_snoRNA: U3 snoRNA is a member of the box C/D class of small nucleolar RNAs. The U3 snoRNA secondary structure is characterised by a small 5' domain (with boxes A and A'), and a larger 3' domain (with boxes B, C, C', and D), the two domains being linked by a single-stranded hinge. Boxes B and C form the B/C motif, which appears to be exclusive to U3 snoRNAs, and boxes C' and D form the C'/D motif. The latter is functionally similar to the C/D motifs found in other snoRNAs. The 5' domain and the hinge region act as a pre-rRNA-binding domain. The 3' domain has conserved protein-binding sites. Both the box B/C and box C'/D motifs are sufficient for nuclear retention of U3 snoRNA. The box C'/D motif is also necessary for nucleolar localization, stability and hypermethylation of U3 snoRNA. Both box B/C and C'/D motifs are involved in specific protein interactions and are necessary for the rRNA processing functions of U3 snoRNA.

View fRNAdb secondary structures for GC21M029186

Additional gene information for GC21M029186 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for GC21M029186 Gene

Genomics for GC21M029186 Gene

GeneHancer (GH) Regulatory Elements for GC21M029186 Gene

Promoters and enhancers for GC21M029186 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH21J029180 Enhancer 1.5 FANTOM5 Ensembl ENCODE dbSUPER 0.7 -2.0 -2037 4.6 PKNOX1 ATF1 FOXA2 RAD21 RARA RFX5 YY1 ZNF335 ZNF366 FOS BACH1 CCT8 MAP3K7CL LINC00189 RWDD2B USP16 ENSG00000212479 GC21M029186 LOC105372767 ENSG00000224649
GH21J029185 Enhancer 1.1 FANTOM5 Ensembl dbSUPER 0.4 -5.1 -5062 1 RXRA CEBPB MAX CEBPG REST RAD21 YY1 SP1 JUND ZNF416 BACH1 CCT8 LINC00189 MAP3K7CL USP16 ENSG00000224649 ENSG00000212479 GC21M029186
GH21J029177 Enhancer 0.4 ENCODE dbSUPER 0.7 +2.3 2284 1.5 LOC105372767 LINC00189 RWDD2B ENSG00000212479 GC21M029186
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around GC21M029186 on UCSC Golden Path with GeneCards custom track

Genomic Locations for GC21M029186 Gene

Genomic Locations for GC21M029186 Gene
chr21:29,180,425-29,180,639
(GRCh38/hg38)
Size:
215 bases
Orientation:
Minus strand

Genomic View for GC21M029186 Gene

Genes around GC21M029186 on UCSC Golden Path with GeneCards custom track

GC21M029186 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GC21M029186 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

ORGUL Member Location for GC21M029186 Gene

ORGUL Member Location for GC21M029186 gene

No data available for Cytogenetic band and RefSeq DNA sequence for GC21M029186 Gene

Proteins for GC21M029186 Gene

Post-translational modifications for GC21M029186 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GC21M029186 Gene

Domains & Families for GC21M029186 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GC21M029186 Gene

Function for GC21M029186 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GC21M029186 Gene

Localization for GC21M029186 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for GC21M029186 Gene

Pathways & Interactions for GC21M029186 Gene

SuperPathways for GC21M029186 Gene

No Data Available

Interacting Proteins for GC21M029186 Gene

Gene Ontology (GO) - Biological Process for GC21M029186 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GC21M029186 Gene

Drugs & Compounds for GC21M029186 Gene

No Compound Related Data Available

Transcripts for GC21M029186 Gene

fRNAdb Secondary structures for GC21M029186 Gene

  • FR307312
  • FR407125

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for GC21M029186 Gene

No ASD Table

Relevant External Links for GC21M029186 Gene

GeneLoc Exon Structure for
GC21M029186

No data available for mRNA/cDNA for GC21M029186 Gene

Expression for GC21M029186 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GC21M029186 Gene

Orthologs for GC21M029186 Gene

No data available for Orthologs and Evolution for GC21M029186 Gene

Paralogs for GC21M029186 Gene

No data available for Paralogs for GC21M029186 Gene

Variants for GC21M029186 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for GC21M029186 Gene

Disorders for GC21M029186 Gene

No disorders were found for GC21M029186 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GC21M029186 Gene

Publications for GC21M029186 Gene

  1. Nuclear retention elements of U3 small nucleolar RNA. (PMID: 10567566) Speckmann W … Terns MP (Molecular and cellular biology 1999) 1
  2. The uRNA database. (PMID: 9016512) Zwieb C (Nucleic acids research 1997) 1

Products for GC21M029186 Gene

Sources for GC21M029186 Gene

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