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Aliases for GC20P063181 Gene

Subcategory (RNA class) for GC20P063181 Gene

miRNA

Quality Score for this RNA gene is

12.4

Aliases for GC20P063181 Gene

No Aliases found

No data available for External Ids for GC20P063181 Gene

Summaries for GC20P063181 Gene

GeneCards Summary for GC20P063181 Gene

GC20P063181 is an RNA Gene, and is affiliated with the miRNA class.

fRNAdb sequence ontologies for GC20P063181 Gene - the ORGUL cluster for this gene includes several descriptions:

  • pre_miRNA: The 60-70 nucleotide region remain after Drosha processing of the primary transcript, that folds back upon itself to form a hairpin sructure.

  • nc_conserved_region: Non-coding region of sequence similarity by descent from a common ancestor.

View fRNAdb secondary structures for GC20P063181

Additional gene information for GC20P063181 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for GC20P063181 Gene

Genomics for GC20P063181 Gene

GeneHancer (GH) Regulatory Elements for GC20P063181 Gene

Promoters and enhancers for GC20P063181 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH20I063172 Enhancer 1.4 FANTOM5 Ensembl ENCODE 550.8 -1.9 -1855 8.3 SIN3A ZNF48 ZNF121 GLIS2 ZNF143 ATF7 RUNX3 KLF13 SP3 MXD4 MIR124-3 GC20P063181 ARFRP1 TNFRSF6B BIRC7 CHRNA4 ENSG00000231977 RTEL1 KCNQ2 ZNF512B
GH20I063168 Enhancer 0.5 ENCODE 0.4 -11.3 -11251 0.1 HIC1 BCL11A SCRT2 ZNF600 ZBTB7A ENSG00000231977 GC20P063181 LOC105376996
GH20I063167 Enhancer 0.4 ENCODE 0.4 -10.8 -10779 0.2 CTBP2 ZBTB33 ENSG00000231977 BIRC7 GC20P063181 LOC105376996
GH20I063169 Enhancer 0.4 ENCODE 0.4 -10.5 -10462 0.1 GLIS1 CTBP2 ENSG00000231977 GC20P063181 LOC105376996
GH20I063156 Enhancer 0.2 FANTOM5 0.3 -22.3 -22267 0.3 COL20A1 BHLHE23 GC20P063181 LOC105376996
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around GC20P063181 on UCSC Golden Path with GeneCards custom track

Genomic Locations for GC20P063181 Gene

Genomic Locations for GC20P063181 Gene
chr20:63,178,485-63,178,598
(GRCh38/hg38)
Size:
114 bases
Orientation:
Plus strand

Genomic View for GC20P063181 Gene

Genes around GC20P063181 on UCSC Golden Path with GeneCards custom track

GC20P063181 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GC20P063181 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

ORGUL Member Location for GC20P063181 Gene

ORGUL Member Location for GC20P063181 gene

No data available for Cytogenetic band and RefSeq DNA sequence for GC20P063181 Gene

Proteins for GC20P063181 Gene

Post-translational modifications for GC20P063181 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GC20P063181 Gene

Domains & Families for GC20P063181 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GC20P063181 Gene

Function for GC20P063181 Gene

Animal Model Products

miRNA for GC20P063181 Gene

miRTarBase miRNAs that target GC20P063181

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for GC20P063181 Gene

Localization for GC20P063181 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for GC20P063181 Gene

Pathways & Interactions for GC20P063181 Gene

SuperPathways for GC20P063181 Gene

No Data Available

Interacting Proteins for GC20P063181 Gene

Gene Ontology (GO) - Biological Process for GC20P063181 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GC20P063181 Gene

Drugs & Compounds for GC20P063181 Gene

No Compound Related Data Available

Transcripts for GC20P063181 Gene

fRNAdb Secondary structures for GC20P063181 Gene

  • FR393930
  • FR184134
  • FR241742
  • FR046730

Alternative Splicing Database (ASD) splice patterns (SP) for GC20P063181 Gene

No ASD Table

Relevant External Links for GC20P063181 Gene

GeneLoc Exon Structure for
GC20P063181

No data available for mRNA/cDNA for GC20P063181 Gene

Expression for GC20P063181 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GC20P063181 Gene

Orthologs for GC20P063181 Gene

No data available for Orthologs and Evolution for GC20P063181 Gene

Paralogs for GC20P063181 Gene

No data available for Paralogs for GC20P063181 Gene

Variants for GC20P063181 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for GC20P063181 Gene

Disorders for GC20P063181 Gene

No disorders were found for GC20P063181 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GC20P063181 Gene

Publications for GC20P063181 Gene

  1. Identification and classification of conserved RNA secondary structures in the human genome. (PMID: 16628248) Pedersen JS … Haussler D (PLoS computational biology 2006) 1
  2. RNAdb--a comprehensive mammalian noncoding RNA database. (PMID: 15608161) Pang KC … Mattick JS (Nucleic acids research 2005) 1
  3. Mapping of conserved RNA secondary structures predicts thousands of functional noncoding RNAs in the human genome. (PMID: 16273071) Washietl S … Stadler PF (Nature biotechnology 2005) 1
  4. Identification of many microRNAs that copurify with polyribosomes in mammalian neurons. (PMID: 14691248) Kim J … Ruvkun G (Proceedings of the National Academy of Sciences of the United States of America 2004) 1
  5. Human embryonic stem cells express a unique set of microRNAs. (PMID: 15183728) Suh MR … Kim KS (Developmental biology 2004) 1

Products for GC20P063181 Gene

Sources for GC20P063181 Gene

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