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Aliases for GC20P062974 Gene

Subcategory (RNA class) for GC20P062974 Gene

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Quality Score for this RNA gene is

13.4

Aliases for GC20P062974 Gene

No Aliases found

ORGUL Members for GC20P062974 Gene

No data available for External Ids for GC20P062974 Gene

Summaries for GC20P062974 Gene

GeneCards Summary for GC20P062974 Gene

GC20P062974 is an RNA Gene, and is affiliated with the undefined RNA class.

fRNAdb sequence ontologies for GC20P062974 Gene

  • nc_conserved_region: Non-coding region of sequence similarity by descent from a common ancestor.

View fRNAdb secondary structures for GC20P062974

Additional gene information for GC20P062974 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for GC20P062974 Gene

Genomics for GC20P062974 Gene

GeneHancer (GH) Regulatory Elements for GC20P062974 Gene

Promoters and enhancers for GC20P062974 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH20J062971 Enhancer 1.2 Ensembl ENCODE 650.7 -0.6 -634 3.8 HDGF PKNOX1 ARNT ZFP64 ARID4B NEUROD1 SIN3A ZNF2 ZBTB7B SLC30A9 GC20P062974 DIDO1 MIR647 UCKL1 RPS21 TAF4 GMEB2 ENSG00000226332 SLC17A9
GH20J062977 Enhancer 1 Ensembl ENCODE 0.7 +3.6 3619 1.2 PKNOX1 BMI1 KLF14 BATF KLF5 IRF4 ZNF207 ZNF143 ATF7 ETV6 DIDO1 TAF4 MIR647 UCKL1 GMEB2 GC20P062974 BHLHE23
GH20J062951 Promoter/Enhancer 2.3 EPDnew FANTOM5 Ensembl ENCODE 0.3 -20.3 -20284 5 PKNOX1 FOXA2 SMAD1 MLX ZFP64 ARID4B SIN3A DMAP1 ZBTB7B YY1 SLC17A9 DIDO1 MRGBP GMEB2 GC20P062974
GH20J062970 Enhancer 0.6 ENCODE 0.7 -3.4 -3389 0.2 IRF2 NFIB MIER2 KDM3A ETV5 ZGPAT XRCC5 EGR1 POLR2A NFKBIZ GC20P062974 SLC17A9
GH20J062989 Enhancer 0.7 FANTOM5 Ensembl 0.4 +14.9 14934 0.3 SP1 STAT1 MLLT1 OGFR DPH3P1 GC20P062974 BHLHE23
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around GC20P062974 on UCSC Golden Path with GeneCards custom track

Genomic Locations for GC20P062974 Gene

Genomic Locations for GC20P062974 Gene
chr20:62,974,433-62,974,668
(GRCh38/hg38)
Size:
236 bases
Orientation:
Plus strand

Genomic View for GC20P062974 Gene

Genes around GC20P062974 on UCSC Golden Path with GeneCards custom track

GC20P062974 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GC20P062974 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

ORGUL Member Location for GC20P062974 Gene

ORGUL Member Location for GC20P062974 gene

No data available for Cytogenetic band and RefSeq DNA sequence for GC20P062974 Gene

Proteins for GC20P062974 Gene

Post-translational modifications for GC20P062974 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GC20P062974 Gene

Domains & Families for GC20P062974 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GC20P062974 Gene

Function for GC20P062974 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GC20P062974 Gene

Localization for GC20P062974 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for GC20P062974 Gene

Pathways & Interactions for GC20P062974 Gene

SuperPathways for GC20P062974 Gene

No Data Available

Interacting Proteins for GC20P062974 Gene

Gene Ontology (GO) - Biological Process for GC20P062974 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GC20P062974 Gene

Drugs & Compounds for GC20P062974 Gene

No Compound Related Data Available

Transcripts for GC20P062974 Gene

fRNAdb Secondary structures for GC20P062974 Gene

  • FR211851

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for GC20P062974 Gene

No ASD Table

Relevant External Links for GC20P062974 Gene

GeneLoc Exon Structure for
GC20P062974

No data available for mRNA/cDNA for GC20P062974 Gene

Expression for GC20P062974 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GC20P062974 Gene

Orthologs for GC20P062974 Gene

No data available for Orthologs and Evolution for GC20P062974 Gene

Paralogs for GC20P062974 Gene

No data available for Paralogs for GC20P062974 Gene

Variants for GC20P062974 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for GC20P062974 Gene

Disorders for GC20P062974 Gene

No disorders were found for GC20P062974 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GC20P062974 Gene

Publications for GC20P062974 Gene

  1. Identification and classification of conserved RNA secondary structures in the human genome. (PMID: 16628248) Pedersen JS … Haussler D (PLoS computational biology 2006) 1
  2. RNAdb--a comprehensive mammalian noncoding RNA database. (PMID: 15608161) Pang KC … Mattick JS (Nucleic acids research 2005) 1
  3. Mapping of conserved RNA secondary structures predicts thousands of functional noncoding RNAs in the human genome. (PMID: 16273071) Washietl S … Stadler PF (Nature biotechnology 2005) 1

Products for GC20P062974 Gene

Sources for GC20P062974 Gene

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