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Aliases for GC20P034899 Gene

Subcategory (RNA class) for GC20P034899 Gene

piRNA

Quality Score for this RNA gene is

19

Aliases for GC20P034899 Gene

No Aliases found

No data available for External Ids for GC20P034899 Gene

Summaries for GC20P034899 Gene

GeneCards Summary for GC20P034899 Gene

GC20P034899 is an RNA Gene, and is affiliated with the piRNA class.

fRNAdb sequence ontologies for GC20P034899 Gene

  • piRNA: A small non coding RNA, part of a silencing system that prevents the spreading of selfish genetic elements.

View fRNAdb secondary structures for GC20P034899

Additional gene information for GC20P034899 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for GC20P034899 Gene

Genomics for GC20P034899 Gene

GeneHancer (GH) Regulatory Elements for GC20P034899 Gene

Promoters and enhancers for GC20P034899 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH20J034899 Enhancer 0.7 ENCODE 600.7 +1.5 1535 0.2 ZNF384 MAFK SP7 SMARCA4 DPF2 NFE2L2 ZNF7 ZNF316 NFE2 OSR2 GC20P034899 NCOA6 ACSS2 MYH7B
GH20J034874 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 0.3 -22.3 -22252 4.4 ZNF652 SP1 ZFX CC2D1A ELF3 CTCF MNT NKRF POLR2A MLLT1 ACSS2 MAP1LC3A PIGU PROCR NCOA6 GC20P034874 GGT7 GC20P034899
GH20J034903 Enhancer 1.5 FANTOM5 Ensembl ENCODE dbSUPER 0.4 +7.8 7823 6.2 NFIB SP7 CREM MZF1 IKZF1 POLR2A ZNF24 RXRA ZNF600 PRDM10 NCOA6 PIGU MIR499A EDEM2 MMP24 MMP24OS TRPC4AP ACSS2 TP53INP2 GC20P034899
GH20J034896 Enhancer 0.7 Ensembl dbSUPER 0.7 -2.2 -2161 0.6 SP1 POLR2A RXRA JUND ZBTB33 HNF4A HNF4G MMP24OS NCOA6 GC20P034899 GGT7 ACSS2
GH20J034921 Enhancer 1.2 Ensembl ENCODE dbSUPER 0.3 +24.0 23994 2.5 CEBPG SP1 RXRA CEBPA GATAD2A FOXA2 ZNF316 SOX13 CEBPB CHD2 PIGU GSS MIR499A EDEM2 MMP24OS NCOA6 GC20P034899 MYH7B ACSS2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around GC20P034899 on UCSC Golden Path with GeneCards custom track

Genomic Locations for GC20P034899 Gene

Genomic Locations for GC20P034899 Gene
chr20:34,898,478-34,898,510
(GRCh38/hg38)
Size:
33 bases
Orientation:
Plus strand

Genomic View for GC20P034899 Gene

Genes around GC20P034899 on UCSC Golden Path with GeneCards custom track

GC20P034899 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GC20P034899 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

ORGUL Member Location for GC20P034899 Gene

ORGUL Member Location for GC20P034899 gene

No data available for Cytogenetic band and RefSeq DNA sequence for GC20P034899 Gene

Proteins for GC20P034899 Gene

Post-translational modifications for GC20P034899 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GC20P034899 Gene

Domains & Families for GC20P034899 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GC20P034899 Gene

Function for GC20P034899 Gene

Phenotypes From GWAS Catalog for GC20P034899 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GC20P034899 Gene

Localization for GC20P034899 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for GC20P034899 Gene

Pathways & Interactions for GC20P034899 Gene

PathCards logo

SuperPathways for GC20P034899 Gene

No Data Available

Interacting Proteins for GC20P034899 Gene

Gene Ontology (GO) - Biological Process for GC20P034899 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GC20P034899 Gene

Drugs & Compounds for GC20P034899 Gene

No Compound Related Data Available

Transcripts for GC20P034899 Gene

fRNAdb Secondary structures for GC20P034899 Gene

  • FR264324
  • FR329236
  • FR036964

Alternative Splicing Database (ASD) splice patterns (SP) for GC20P034899 Gene

No ASD Table

Relevant External Links for GC20P034899 Gene

GeneLoc Exon Structure for
GC20P034899

No data available for mRNA/cDNA for GC20P034899 Gene

Expression for GC20P034899 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GC20P034899 Gene

Orthologs for GC20P034899 Gene

No data available for Orthologs and Evolution for GC20P034899 Gene

Paralogs for GC20P034899 Gene

No data available for Paralogs for GC20P034899 Gene

Variants for GC20P034899 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for GC20P034899 Gene

Disorders for GC20P034899 Gene

No disorders were found for GC20P034899 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GC20P034899 Gene

Publications for GC20P034899 Gene

  1. A germline-specific class of small RNAs binds mammalian Piwi proteins. (PMID: 16751776) Girard A … Carmell MA (Nature 2006) 1
  2. RNAdb--a comprehensive mammalian noncoding RNA database. (PMID: 15608161) Pang KC … Mattick JS (Nucleic acids research 2005) 1

No data available for External Links for GC20P034899 Gene

Products for GC20P034899 Gene

Sources for GC20P034899 Gene

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