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Aliases for GC19P048838 Gene

Subcategory (RNA class) for GC19P048838 Gene

antisense

Quality Score for this RNA gene is

20

Aliases for GC19P048838 Gene

No Aliases found

No data available for External Ids for GC19P048838 Gene

Summaries for GC19P048838 Gene

GeneCards Summary for GC19P048838 Gene

GC19P048838 is an RNA Gene, and is affiliated with the antisense RNA class.

fRNAdb sequence ontologies for GC19P048838 Gene

  • antisense_RNA: Antisense RNA is RNA that is transcribed from the coding, rather than the template, strand of DNA. It is therefore complementary to mRNA.

View fRNAdb secondary structures for GC19P048838

Additional gene information for GC19P048838 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for GC19P048838 Gene

Genomics for GC19P048838 Gene

GeneHancer (GH) Regulatory Elements for GC19P048838 Gene

Promoters and enhancers for GC19P048838 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH19J048835 Promoter/Enhancer 2 EPDnew Ensembl ENCODE 600.7 -0.4 -395 3 ZNF652 SP1 ELF3 CC2D1A CTCF CBFA2T2 NKRF MLLT1 ZNF687 TFE3 HSD17B14 GC19P048838 GC19P048839 BCAT2 PLEKHA4
GH19J048838 Enhancer 0.7 ENCODE 600.7 +1.8 1813 0.1 SIX5 CREM ZNF143 FOXK2 ELF1 IKZF1 MNT ZNF335 ETS1 BHLHE40 GC19P048838 GC19P048839 HSD17B14 PLEKHA4
GH19J048866 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE dbSUPER 0.3 +31.0 30994 3 CC2D1A ZKSCAN8 CBFA2T2 MLLT1 GTF2F1 ZSCAN21 CDC5L MCM2 TRIM24 SP7 PLEKHA4 PRR12 GRWD1 PIH1D1 SNRNP70 PTOV1-AS2 SNORD35A KDELR1 IRF3 SNORD35B
GH19J048858 Promoter/Enhancer 1.6 Ensembl ENCODE dbSUPER 0.3 +22.6 22624 2.2 CC2D1A SP1 ZFX SIX5 MLLT1 TRIM24 CREM PRDM1 EGR1 SMARCA4 HSD17B14 BCL2L12 NUCB1 PLEKHA4 GC19P048838 GC19P048839
GH19J048842 Enhancer 0.9 Ensembl ENCODE 0.4 +5.4 5442 1.5 CC2D1A CTCF ZNF121 RAD21 ARID2 ZNF143 REST PKNOX1 TRIM22 ZXDB BCAT2 TULP2 IZUMO1 RASIP1 NUCB1 NUCB1-AS1 DBP SEC1P MAMSTR FUT2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around GC19P048838 on UCSC Golden Path with GeneCards custom track

Genomic Locations for GC19P048838 Gene

Genomic Locations for GC19P048838 Gene
chr19:48,837,096-48,837,300
(GRCh38/hg38)
Size:
205 bases
Orientation:
Plus strand

Genomic View for GC19P048838 Gene

Genes around GC19P048838 on UCSC Golden Path with GeneCards custom track

GC19P048838 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GC19P048838 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

ORGUL Member Location for GC19P048838 Gene

ORGUL Member Location for GC19P048838 gene

No data available for Cytogenetic band and RefSeq DNA sequence for GC19P048838 Gene

Proteins for GC19P048838 Gene

Post-translational modifications for GC19P048838 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GC19P048838 Gene

Domains & Families for GC19P048838 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GC19P048838 Gene

Function for GC19P048838 Gene

Phenotypes From GWAS Catalog for GC19P048838 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GC19P048838 Gene

Localization for GC19P048838 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for GC19P048838 Gene

Pathways & Interactions for GC19P048838 Gene

PathCards logo

SuperPathways for GC19P048838 Gene

No Data Available

Interacting Proteins for GC19P048838 Gene

Gene Ontology (GO) - Biological Process for GC19P048838 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GC19P048838 Gene

Drugs & Compounds for GC19P048838 Gene

No Compound Related Data Available

Transcripts for GC19P048838 Gene

fRNAdb Secondary structures for GC19P048838 Gene

  • FR294604

Alternative Splicing Database (ASD) splice patterns (SP) for GC19P048838 Gene

No ASD Table

Relevant External Links for GC19P048838 Gene

GeneLoc Exon Structure for
GC19P048838

No data available for mRNA/cDNA for GC19P048838 Gene

Expression for GC19P048838 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GC19P048838 Gene

Orthologs for GC19P048838 Gene

No data available for Orthologs and Evolution for GC19P048838 Gene

Paralogs for GC19P048838 Gene

No data available for Paralogs for GC19P048838 Gene

Variants for GC19P048838 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for GC19P048838 Gene

Disorders for GC19P048838 Gene

No disorders were found for GC19P048838 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GC19P048838 Gene

Publications for GC19P048838 Gene

  1. The H-Invitational Database (H-InvDB), a comprehensive annotation resource for human genes and transcripts. (PMID: 18089548) Genome Information Integration Project And H-Invitational 2 … Gojobori T (Nucleic acids research 2008) 1
  2. RNAdb--a comprehensive mammalian noncoding RNA database. (PMID: 15608161) Pang KC … Mattick JS (Nucleic acids research 2005) 1
  3. Integrative annotation of 21,037 human genes validated by full-length cDNA clones. (PMID: 15103394) Imanishi T … Sugano S (PLoS biology 2004) 1

No data available for External Links for GC19P048838 Gene

Products for GC19P048838 Gene

Sources for GC19P048838 Gene

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