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Aliases for GC19P047784 Gene

Subcategory (RNA class) for GC19P047784 Gene

SECIS

Quality Score for this RNA gene is

15

Aliases for GC19P047784 Gene

No Aliases found

No data available for External Ids for GC19P047784 Gene

Summaries for GC19P047784 Gene

GeneCards Summary for GC19P047784 Gene

GC19P047784 is an RNA Gene, and is affiliated with the SECIS RNA class.

fRNAdb sequence ontologies for GC19P047784 Gene

  • SECIS_element: The incorporation of selenocysteine into a protein sequence is directed by an in-frame UGA codon (usually a stop codon) within the coding region of the mRNA. Selenoprotein mRNAs contain a conserved secondary structure in the 3' UTR that is required for the distinction of UGA stop from UGA selenocysteine. The selenocysteine insertion sequence (SECIS) is around 60 nt in length and adopts a hairpin structure which is sufficiently well-defined and conserved to act as a computational screen for selenoprotein genes.

Additional gene information for GC19P047784 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for GC19P047784 Gene

Genomics for GC19P047784 Gene

GeneHancer (GH) Regulatory Elements for GC19P047784 Gene

Promoters and enhancers for GC19P047784 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH19J047775 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 0.4 -5.6 -5594 5.5 HDGF PKNOX1 CLOCK FOXA2 ARNT ZFP64 ARID4B SIN3A FEZF1 DMAP1 SELENOW GRWD1 BICRA ZC3H4 NOP53 NOP53-AS1 KDELR1 RPL18 INAFM1 CCDC9
GH19J047788 Enhancer 1 ENCODE dbSUPER 0.7 +4.5 4463 1.1 RB1 ARID4B THRB RAD21 CHAMP1 ZNF614 ARID2 ZNF143 IKZF2 RUNX3 SELENOW GC19P047784 ENSG00000271150
GH19J047785 Enhancer 0.6 ENCODE dbSUPER 0.7 +2.3 2288 1.9 SCRT2 ZSCAN4 SELENOW NOP53 GC19P047784 ENSG00000271150
GH19J047789 Enhancer 1 FANTOM5 ENCODE 0.4 +6.2 6205 1.1 CTCF KLF1 SIN3A RAD21 ZFHX2 ZNF366 POLR2A PATZ1 VEZF1 ZNF143 CABP5 CRX ZC3H4 NOP53-AS1 GRWD1 RASIP1 BICRA NOP53 ENSG00000271150 GC19P047784
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around GC19P047784 on UCSC Golden Path with GeneCards custom track

Genomic Locations for GC19P047784 Gene

Genomic Locations for GC19P047784 Gene
chr19:47,784,320-47,784,388
(GRCh38/hg38)
Size:
69 bases
Orientation:
Plus strand

Genomic View for GC19P047784 Gene

Genes around GC19P047784 on UCSC Golden Path with GeneCards custom track

GC19P047784 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GC19P047784 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for Cytogenetic band and RefSeq DNA sequence for GC19P047784 Gene

Proteins for GC19P047784 Gene

Post-translational modifications for GC19P047784 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GC19P047784 Gene

Domains & Families for GC19P047784 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GC19P047784 Gene

Function for GC19P047784 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GC19P047784 Gene

Localization for GC19P047784 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for GC19P047784 Gene

Pathways & Interactions for GC19P047784 Gene

SuperPathways for GC19P047784 Gene

No Data Available

Interacting Proteins for GC19P047784 Gene

Gene Ontology (GO) - Biological Process for GC19P047784 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GC19P047784 Gene

Drugs & Compounds for GC19P047784 Gene

No Compound Related Data Available

Transcripts for GC19P047784 Gene

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for GC19P047784 Gene

No ASD Table

Relevant External Links for GC19P047784 Gene

GeneLoc Exon Structure for
GC19P047784

No data available for mRNA/cDNA for GC19P047784 Gene

Expression for GC19P047784 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GC19P047784 Gene

Orthologs for GC19P047784 Gene

No data available for Orthologs and Evolution for GC19P047784 Gene

Paralogs for GC19P047784 Gene

No data available for Paralogs for GC19P047784 Gene

Variants for GC19P047784 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for GC19P047784 Gene

Disorders for GC19P047784 Gene

No disorders were found for GC19P047784 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GC19P047784 Gene

Publications for GC19P047784 Gene

  1. A survey of metazoan selenocysteine insertion sequences. (PMID: 12458087) Lambert A … Gautheret D (Biochimie 2002) 1
  2. A novel RNA structural motif in the selenocysteine insertion element of eukaryotic selenoprotein mRNAs. (PMID: 8634917) Walczak R … Krol A (RNA (New York, N.Y.) 1996) 1

Products for GC19P047784 Gene

Sources for GC19P047784 Gene

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