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Aliases for GC19P000897 Gene

Subcategory (RNA class) for GC19P000897 Gene

snRNA

Quality Score for this RNA gene is

15

Aliases for GC19P000897 Gene

No Aliases found

No data available for External Ids for GC19P000897 Gene

Summaries for GC19P000897 Gene

GeneCards Summary for GC19P000897 Gene

GC19P000897 is an RNA Gene, and is affiliated with the snRNA class.

fRNAdb sequence ontologies for GC19P000897 Gene - the ORGUL cluster for this gene includes several descriptions:

  • snRNA: A small nuclear RNA molecule involved in pre-mRNA splicing and processing.

  • U6_snRNA: U6 snRNA is a component of the spliceosome which is involved in splicing pre-mRNA. The putative secondary structure consensus base pairing is confined to a short 5' stem loop, but U6 snRNA is thought to form extensive base-pair interactions with U4 snRNA.

View fRNAdb secondary structures for GC19P000897

Additional gene information for GC19P000897 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for GC19P000897 Gene

Genomics for GC19P000897 Gene

GeneHancer (GH) Regulatory Elements for GC19P000897 Gene

Promoters and enhancers for GC19P000897 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH19J000891 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE dbSUPER 600.7 -0.7 -715 2.7 ZFX ELF3 MNT NKRF MLLT1 ZNF121 GTF2F1 CSDE1 ZNF687 AHR MED16 GC19P000897 RNU6-9 WDR18 GC19M000880 PIR31785
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around GC19P000897 on UCSC Golden Path with GeneCards custom track

Genomic Locations for GC19P000897 Gene

Genomic Locations for GC19P000897 Gene
chr19:893,483-893,590
(GRCh38/hg38)
Size:
108 bases
Orientation:
Plus strand

Genomic View for GC19P000897 Gene

Genes around GC19P000897 on UCSC Golden Path with GeneCards custom track

GC19P000897 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GC19P000897 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

ORGUL Member Location for GC19P000897 Gene

ORGUL Member Location for GC19P000897 gene

No data available for Cytogenetic band and RefSeq DNA sequence for GC19P000897 Gene

Proteins for GC19P000897 Gene

Post-translational modifications for GC19P000897 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GC19P000897 Gene

Domains & Families for GC19P000897 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GC19P000897 Gene

Function for GC19P000897 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GC19P000897 Gene

Localization for GC19P000897 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for GC19P000897 Gene

Pathways & Interactions for GC19P000897 Gene

PathCards logo

SuperPathways for GC19P000897 Gene

No Data Available

Interacting Proteins for GC19P000897 Gene

Gene Ontology (GO) - Biological Process for GC19P000897 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GC19P000897 Gene

Drugs & Compounds for GC19P000897 Gene

No Compound Related Data Available

Transcripts for GC19P000897 Gene

fRNAdb Secondary structures for GC19P000897 Gene

  • FR027467
  • FR260122
  • FR196212
  • FR080027

Alternative Splicing Database (ASD) splice patterns (SP) for GC19P000897 Gene

No ASD Table

Relevant External Links for GC19P000897 Gene

GeneLoc Exon Structure for
GC19P000897

No data available for mRNA/cDNA for GC19P000897 Gene

Expression for GC19P000897 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GC19P000897 Gene

Orthologs for GC19P000897 Gene

No data available for Orthologs and Evolution for GC19P000897 Gene

Paralogs for GC19P000897 Gene

No data available for Paralogs for GC19P000897 Gene

Variants for GC19P000897 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for GC19P000897 Gene

Disorders for GC19P000897 Gene

No disorders were found for GC19P000897 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GC19P000897 Gene

Publications for GC19P000897 Gene

  1. NONCODE: an integrated knowledge database of non-coding RNAs. (PMID: 15608158) Liu C … Chen R (Nucleic acids research 2005) 1
  2. The uRNA database. (PMID: 9016512) Zwieb C (Nucleic acids research 1997) 1
  3. The RNA world of the nucleolus: two major families of small RNAs defined by different box elements with related functions. (PMID: 8797828) Balakin AG … Fournier MJ (Cell 1996) 1
  4. Spliceosomal small nuclear RNAs of Tetrahymena thermophila and some possible snRNA-snRNA base-pairing interactions. (PMID: 1960724) Orum H … Engberg J (Journal of molecular biology 1991) 1
  5. The spliceosomal snRNAs of Caenorhabditis elegans. (PMID: 2339054) Thomas J … Blumenthal T (Nucleic acids research 1990) 1

No data available for External Links for GC19P000897 Gene

Products for GC19P000897 Gene

Sources for GC19P000897 Gene

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