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Aliases for GC19M048794 Gene

Subcategory (RNA class) for GC19M048794 Gene

snRNA

Quality Score for this RNA gene is

15

Aliases for GC19M048794 Gene

No Aliases found

ORGUL Members for GC19M048794 Gene

No data available for External Ids for GC19M048794 Gene

Summaries for GC19M048794 Gene

GeneCards Summary for GC19M048794 Gene

GC19M048794 is an RNA Gene, and is affiliated with the snRNA class.

fRNAdb sequence ontologies for GC19M048794 Gene

  • U6_snRNA: U6 snRNA is a component of the spliceosome which is involved in splicing pre-mRNA. The putative secondary structure consensus base pairing is confined to a short 5' stem loop, but U6 snRNA is thought to form extensive base-pair interactions with U4 snRNA.

Additional gene information for GC19M048794 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for GC19M048794 Gene

Genomics for GC19M048794 Gene

GeneHancer (GH) Regulatory Elements for GC19M048794 Gene

Promoters and enhancers for GC19M048794 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH19J048794 Enhancer 1.3 ENCODE dbSUPER 0.7 -2.6 -2576 2.7 SP1 ELF3 ZFX CC2D1A CTCF ZKSCAN8 SIX5 ZNF148 ZNF121 CEBPG RASIP1 NUCB1-AS1 PRR12 SNRNP70 IZUMO1 TULP2 MAMSTR FUT2 NUCB1 CGB7
GH19J048788 Enhancer 1.1 Ensembl ENCODE 0.4 +5.0 5021 1.3 CC2D1A CTCF ZSCAN21 SP7 PRDM1 RAD21 RXRA ARID2 GATAD2A ATF1 GC19P048785 RNU6-317P GC19M048794
GH19J048798 Enhancer 1 Ensembl ENCODE dbSUPER 0.4 -6.0 -5964 1.2 ZSCAN21 ZIC2 ATF7 ZNF585B ZBTB48 ATF2 ZNF366 EBF1 GLIS1 HSD17B14 PRR12 NUCB1 TULP2 IZUMO1 RASIP1 PRMT1 NUCB1-AS1 MAMSTR FUT2
GH19J048797 Enhancer 0.4 dbSUPER 0.4 -5.0 -5013 0.6 PKNOX1 ZNF16 GRWD1 IZUMO1 RASIP1 PRR12 NUCB1 NUCB1-AS1 TULP2 CYTH2 RUVBL2 HSD17B14
GH19J048790 Enhancer 0.2 Ensembl 0.7 +4.2 4157 0.2 GC19M048794 GC19P048785 RNU6-317P
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around GC19M048794 on UCSC Golden Path with GeneCards custom track

Genomic Locations for GC19M048794 Gene

Genomic Locations for GC19M048794 Gene
chr19:48,793,151-48,793,258
(GRCh38/hg38)
Size:
108 bases
Orientation:
Minus strand

Genomic View for GC19M048794 Gene

Genes around GC19M048794 on UCSC Golden Path with GeneCards custom track

GC19M048794 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GC19M048794 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for Cytogenetic band and RefSeq DNA sequence for GC19M048794 Gene

Proteins for GC19M048794 Gene

Post-translational modifications for GC19M048794 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GC19M048794 Gene

Domains & Families for GC19M048794 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GC19M048794 Gene

Function for GC19M048794 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GC19M048794 Gene

Localization for GC19M048794 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for GC19M048794 Gene

Pathways & Interactions for GC19M048794 Gene

PathCards logo

SuperPathways for GC19M048794 Gene

No Data Available

Interacting Proteins for GC19M048794 Gene

Gene Ontology (GO) - Biological Process for GC19M048794 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GC19M048794 Gene

Drugs & Compounds for GC19M048794 Gene

No Compound Related Data Available

Transcripts for GC19M048794 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for GC19M048794 Gene

No ASD Table

Relevant External Links for GC19M048794 Gene

GeneLoc Exon Structure for
GC19M048794

No data available for mRNA/cDNA for GC19M048794 Gene

Expression for GC19M048794 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GC19M048794 Gene

Orthologs for GC19M048794 Gene

No data available for Orthologs and Evolution for GC19M048794 Gene

Paralogs for GC19M048794 Gene

No data available for Paralogs for GC19M048794 Gene

Variants for GC19M048794 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for GC19M048794 Gene

Disorders for GC19M048794 Gene

No disorders were found for GC19M048794 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GC19M048794 Gene

Publications for GC19M048794 Gene

  1. The uRNA database. (PMID: 9016512) Zwieb C (Nucleic acids research 1997) 1
  2. Spliceosomal small nuclear RNAs of Tetrahymena thermophila and some possible snRNA-snRNA base-pairing interactions. (PMID: 1960724) Orum H … Engberg J (Journal of molecular biology 1991) 1
  3. The spliceosomal snRNAs of Caenorhabditis elegans. (PMID: 2339054) Thomas J … Blumenthal T (Nucleic acids research 1990) 1

No data available for External Links for GC19M048794 Gene

Products for GC19M048794 Gene

Sources for GC19M048794 Gene

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