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Aliases for GC19M038968 Gene

Subcategory (RNA class) for GC19M038968 Gene

snRNA

Quality Score for this RNA gene is

15

Aliases for GC19M038968 Gene

No Aliases found

ORGUL Members for GC19M038968 Gene

No data available for External Ids for GC19M038968 Gene

Summaries for GC19M038968 Gene

GeneCards Summary for GC19M038968 Gene

GC19M038968 is an RNA Gene, and is affiliated with the snRNA class.

fRNAdb sequence ontologies for GC19M038968 Gene

  • U6_snRNA: U6 snRNA is a component of the spliceosome which is involved in splicing pre-mRNA. The putative secondary structure consensus base pairing is confined to a short 5' stem loop, but U6 snRNA is thought to form extensive base-pair interactions with U4 snRNA.

Additional gene information for GC19M038968 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for GC19M038968 Gene

Genomics for GC19M038968 Gene

GeneHancer (GH) Regulatory Elements for GC19M038968 Gene

Promoters and enhancers for GC19M038968 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH19J038798 Enhancer 1.1 ENCODE dbSUPER 0.7 -2.5 -2548 1.7 PKNOX1 CLOCK FOXA2 ZNF133 NEUROD1 FEZF1 ZNF766 ZNF548 FOS ATF7 HNRNPL RPS16 ENSG00000269688 PLEKHG2 RN7SL566P ZNF573 ACTN4 FBXO17 LGALS7B LGALS7
GH19J038792 Enhancer 0.8 ENCODE dbSUPER 0.7 +3.9 3949 1.9 PKNOX1 RFX1 RXRA ZNF621 ELF1 RAD21 ZNF121 POLR2A ZSCAN5C IKZF1 LGALS7 RNU6-140P LGALS7B CAPN12 GC19M038968
GH19J038805 Enhancer 1 Ensembl ENCODE dbSUPER 0.4 -8.3 -8342 0.3 JUN ZBTB40 ZNF518A GABPA ZBTB48 GABPB1 IKZF1 NR2C1 EHMT2 ETV6 RNU6-140P LGALS4 GC19P038813 GC19M038968
GH19J038806 Enhancer 0.9 ENCODE dbSUPER 0.4 -11.0 -10969 2.2 BCOR YBX3 TAL1 KLF17 TCF12 ZNF366 CBFA2T2 KLF8 SP3 L3MBTL2 LGALS7B LGALS7 ZFP36 RPS16 ECH1 GC19P038813 LGALS4 GC19M038968 RNU6-140P
GH19J038794 Enhancer 0.5 ENCODE dbSUPER 0.7 +2.9 2893 0.2 ZNF121 RNU6-140P GC19M038968 LGALS7B
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around GC19M038968 on UCSC Golden Path with GeneCards custom track

Genomic Locations for GC19M038968 Gene

Genomic Locations for GC19M038968 Gene
chr19:38,797,001-38,797,109
(GRCh38/hg38)
Size:
109 bases
Orientation:
Minus strand

Genomic View for GC19M038968 Gene

Genes around GC19M038968 on UCSC Golden Path with GeneCards custom track

GC19M038968 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GC19M038968 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for Cytogenetic band and RefSeq DNA sequence for GC19M038968 Gene

Proteins for GC19M038968 Gene

Post-translational modifications for GC19M038968 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GC19M038968 Gene

Domains & Families for GC19M038968 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GC19M038968 Gene

Function for GC19M038968 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GC19M038968 Gene

Localization for GC19M038968 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for GC19M038968 Gene

Pathways & Interactions for GC19M038968 Gene

SuperPathways for GC19M038968 Gene

No Data Available

Interacting Proteins for GC19M038968 Gene

Gene Ontology (GO) - Biological Process for GC19M038968 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GC19M038968 Gene

Drugs & Compounds for GC19M038968 Gene

No Compound Related Data Available

Transcripts for GC19M038968 Gene

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for GC19M038968 Gene

No ASD Table

Relevant External Links for GC19M038968 Gene

GeneLoc Exon Structure for
GC19M038968

No data available for mRNA/cDNA for GC19M038968 Gene

Expression for GC19M038968 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GC19M038968 Gene

Orthologs for GC19M038968 Gene

No data available for Orthologs and Evolution for GC19M038968 Gene

Paralogs for GC19M038968 Gene

No data available for Paralogs for GC19M038968 Gene

Variants for GC19M038968 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for GC19M038968 Gene

Disorders for GC19M038968 Gene

No disorders were found for GC19M038968 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GC19M038968 Gene

Publications for GC19M038968 Gene

  1. The uRNA database. (PMID: 9016512) Zwieb C (Nucleic acids research 1997) 1
  2. Spliceosomal small nuclear RNAs of Tetrahymena thermophila and some possible snRNA-snRNA base-pairing interactions. (PMID: 1960724) Orum H … Engberg J (Journal of molecular biology 1991) 1
  3. The spliceosomal snRNAs of Caenorhabditis elegans. (PMID: 2339054) Thomas J … Blumenthal T (Nucleic acids research 1990) 1

Products for GC19M038968 Gene

Sources for GC19M038968 Gene

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