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Aliases for GC19M003983 Gene

Subcategory (RNA class) for GC19M003983 Gene

snoRNA

Quality Score for this RNA gene is

17

Aliases for GC19M003983 Gene

No Aliases found

ORGUL Members for GC19M003983 Gene

No data available for External Ids for GC19M003983 Gene

Summaries for GC19M003983 Gene

GeneCards Summary for GC19M003983 Gene

GC19M003983 is an RNA Gene, and is affiliated with the snoRNA class.

fRNAdb sequence ontologies for GC19M003983 Gene

  • C_D_box_snoRNA: Most box C/D snoRNAs also contain long (>10 nt) sequences complementary to rRNA. Boxes C and D, as well as boxes C' and D', are usually located in close proximity, and form a structure known as the box C/D motif. This motif is important for snoRNA stability, processing, nucleolar targeting and function. A small number of box C/D snoRNAs are involved in rRNA processing; most, however, are known or predicted to serve as guide RNAs in ribose methylation of rRNA. Targeting involves direct base pairing of the snoRNA at the rRNA site to be modified and selection of a rRNA nucleotide a fixed distance from box D or D'.

Additional gene information for GC19M003983 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for GC19M003983 Gene

Genomics for GC19M003983 Gene

GeneHancer (GH) Regulatory Elements for GC19M003983 Gene

Promoters and enhancers for GC19M003983 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH19J003981 Promoter/Enhancer 1.6 Ensembl ENCODE 0.7 -2.0 -2014 8.2 CLOCK FEZF1 DMAP1 YY1 SLC30A9 ZNF213 ZNF143 SP3 NFYC MEF2D EEF2 PIR48614 CACTIN ENSG00000267030 YJU2 ENSG00000267769 CACTIN-AS1 APBA3 HDGFL2 ENSG00000267138
GH19J003980 Enhancer 0.5 ENCODE 0.7 +2.3 2334 0.2 HIC1 SMAD5 POLR2A SUPT5H GC19P003978 GC19M003983 SNORD37 EEF2
GH19J003979 Enhancer 0.5 ENCODE 0.7 +2.7 2654 0.2 HIC1 SSRP1 SMAD5 POLR2A MBD1 RBM22 SUPT5H GC19P003978 GC19M003983 SNORD37 EEF2
GH19J003982 Enhancer 0.5 ENCODE 0.7 +3.1 3134 0.2 SSRP1 BCL11A POLR2A ZNF600 SUPT5H GC19P003978 GC19M003983 SNORD37 EEF2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around GC19M003983 on UCSC Golden Path with GeneCards custom track

Genomic Locations for GC19M003983 Gene

Genomic Locations for GC19M003983 Gene
chr19:3,982,506-3,982,572
(GRCh38/hg38)
Size:
67 bases
Orientation:
Minus strand

Genomic View for GC19M003983 Gene

Genes around GC19M003983 on UCSC Golden Path with GeneCards custom track

GC19M003983 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GC19M003983 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for Cytogenetic band and RefSeq DNA sequence for GC19M003983 Gene

Proteins for GC19M003983 Gene

Post-translational modifications for GC19M003983 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GC19M003983 Gene

Domains & Families for GC19M003983 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GC19M003983 Gene

Function for GC19M003983 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GC19M003983 Gene

Localization for GC19M003983 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for GC19M003983 Gene

Pathways & Interactions for GC19M003983 Gene

SuperPathways for GC19M003983 Gene

No Data Available

Interacting Proteins for GC19M003983 Gene

Gene Ontology (GO) - Biological Process for GC19M003983 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GC19M003983 Gene

Drugs & Compounds for GC19M003983 Gene

No Compound Related Data Available

Transcripts for GC19M003983 Gene

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for GC19M003983 Gene

No ASD Table

Relevant External Links for GC19M003983 Gene

GeneLoc Exon Structure for
GC19M003983

No data available for mRNA/cDNA for GC19M003983 Gene

Expression for GC19M003983 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GC19M003983 Gene

Orthologs for GC19M003983 Gene

No data available for Orthologs and Evolution for GC19M003983 Gene

Paralogs for GC19M003983 Gene

No data available for Paralogs for GC19M003983 Gene

Variants for GC19M003983 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for GC19M003983 Gene

Disorders for GC19M003983 Gene

No disorders were found for GC19M003983 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GC19M003983 Gene

Publications for GC19M003983 Gene

  1. snoRNA-LBME-db, a comprehensive database of human H/ACA and C/D box snoRNAs. (PMID: 16381836) Lestrade L … Weber MJ (Nucleic acids research 2006) 1
  2. NONCODE: an integrated knowledge database of non-coding RNAs. (PMID: 15608158) Liu C … Chen R (Nucleic acids research 2005) 1
  3. RNAdb--a comprehensive mammalian noncoding RNA database. (PMID: 15608161) Pang KC … Mattick JS (Nucleic acids research 2005) 1
  4. Small nucleolar RNAs: an abundant group of noncoding RNAs with diverse cellular functions. (PMID: 12007400) Kiss T (Cell 2002) 1
  5. RNomics: an experimental approach that identifies 201 candidates for novel, small, non-messenger RNAs in mouse. (PMID: 11387227) Hüttenhofer A … Brosius J (The EMBO journal 2001) 1

Products for GC19M003983 Gene

Sources for GC19M003983 Gene

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