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Aliases for GC18P055520 Gene

Subcategory (RNA class) for GC18P055520 Gene

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Quality Score for this RNA gene is

13.4

Aliases for GC18P055520 Gene

No Aliases found

ORGUL Members for GC18P055520 Gene

No data available for External Ids for GC18P055520 Gene

Summaries for GC18P055520 Gene

GeneCards Summary for GC18P055520 Gene

GC18P055520 is an RNA Gene, and is affiliated with the undefined RNA class.

fRNAdb sequence ontologies for GC18P055520 Gene

  • nc_conserved_region: Non-coding region of sequence similarity by descent from a common ancestor.

View fRNAdb secondary structures for GC18P055520

Additional gene information for GC18P055520 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for GC18P055520 Gene

Genomics for GC18P055520 Gene

GeneHancer (GH) Regulatory Elements for GC18P055520 Gene

Promoters and enhancers for GC18P055520 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH18J055508 Promoter/Enhancer 1.8 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 0.4 -10.1 -10103 4.2 JUN BATF RAD21 YY1 ZNF316 POLR2A FOS RUNX3 MAFK NANOG TCF4 GC18P055498 GC18P055520
GH18J055499 Enhancer 1.3 FANTOM5 Ensembl ENCODE dbSUPER 0.4 -18.7 -18733 4.7 RXRA JUN FEZF1 ZEB2 JUND CREB1 FOS PRDM1 RUNX3 TCF4 GC18P055498 GC18P055520
GH18J055516 Enhancer 0.5 ENCODE dbSUPER 0.7 -4.2 -4193 0.2 FOS GC18P055520 GC18P055498 TCF4
GH18J055515 Enhancer 0.4 Ensembl dbSUPER 0.7 -5.0 -4957 0.4 GC18P055520 GC18P055498 TCF4
GH18J055514 Enhancer 0.6 ENCODE dbSUPER 0.4 -6.3 -6301 1 JUN ZSCAN4 GC18P055520 GC18P055498 TCF4
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around GC18P055520 on UCSC Golden Path with GeneCards custom track

Genomic Locations for GC18P055520 Gene

Genomic Locations for GC18P055520 Gene
chr18:55,520,358-55,520,478
(GRCh38/hg38)
Size:
121 bases
Orientation:
Plus strand

Genomic View for GC18P055520 Gene

Genes around GC18P055520 on UCSC Golden Path with GeneCards custom track

GC18P055520 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GC18P055520 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

ORGUL Member Location for GC18P055520 Gene

ORGUL Member Location for GC18P055520 gene

No data available for Cytogenetic band and RefSeq DNA sequence for GC18P055520 Gene

Proteins for GC18P055520 Gene

Post-translational modifications for GC18P055520 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GC18P055520 Gene

Domains & Families for GC18P055520 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GC18P055520 Gene

Function for GC18P055520 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GC18P055520 Gene

Localization for GC18P055520 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for GC18P055520 Gene

Pathways & Interactions for GC18P055520 Gene

SuperPathways for GC18P055520 Gene

No Data Available

Interacting Proteins for GC18P055520 Gene

Gene Ontology (GO) - Biological Process for GC18P055520 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GC18P055520 Gene

Drugs & Compounds for GC18P055520 Gene

No Compound Related Data Available

Transcripts for GC18P055520 Gene

fRNAdb Secondary structures for GC18P055520 Gene

  • FR100863
  • FR356274

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for GC18P055520 Gene

No ASD Table

Relevant External Links for GC18P055520 Gene

GeneLoc Exon Structure for
GC18P055520

No data available for mRNA/cDNA for GC18P055520 Gene

Expression for GC18P055520 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GC18P055520 Gene

Orthologs for GC18P055520 Gene

No data available for Orthologs and Evolution for GC18P055520 Gene

Paralogs for GC18P055520 Gene

No data available for Paralogs for GC18P055520 Gene

Variants for GC18P055520 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for GC18P055520 Gene

Disorders for GC18P055520 Gene

No disorders were found for GC18P055520 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GC18P055520 Gene

Publications for GC18P055520 Gene

  1. Identification and classification of conserved RNA secondary structures in the human genome. (PMID: 16628248) Pedersen JS … Haussler D (PLoS computational biology 2006) 1
  2. RNAdb--a comprehensive mammalian noncoding RNA database. (PMID: 15608161) Pang KC … Mattick JS (Nucleic acids research 2005) 1
  3. Mapping of conserved RNA secondary structures predicts thousands of functional noncoding RNAs in the human genome. (PMID: 16273071) Washietl S … Stadler PF (Nature biotechnology 2005) 1

Products for GC18P055520 Gene

Sources for GC18P055520 Gene

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