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Aliases for GC18P055423 Gene

Subcategory (RNA class) for GC18P055423 Gene

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Quality Score for this RNA gene is

13.4

Aliases for GC18P055423 Gene

No Aliases found

ORGUL Members for GC18P055423 Gene

No data available for External Ids for GC18P055423 Gene

Summaries for GC18P055423 Gene

GeneCards Summary for GC18P055423 Gene

GC18P055423 is an RNA Gene, and is affiliated with the undefined RNA class.

fRNAdb sequence ontologies for GC18P055423 Gene

  • nc_conserved_region: Non-coding region of sequence similarity by descent from a common ancestor.

View fRNAdb secondary structures for GC18P055423

Additional gene information for GC18P055423 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for GC18P055423 Gene

Genomics for GC18P055423 Gene

GeneHancer (GH) Regulatory Elements for GC18P055423 Gene

Promoters and enhancers for GC18P055423 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH18J055418 Promoter/Enhancer 2.1 VISTA UCNEbase Ensembl ENCODE dbSUPER 650.7 -1.5 -1508 5.7 ZNF362 REST DPF2 PRDM6 ZNF316 POLR2A FOXP2 IKZF2 RUNX3 MAFK GC18P055423 GC18P055312 TCF4
GH18J055398 Promoter/Enhancer 2.9 UCNEbase EPDnew FANTOM5 Ensembl ENCODE dbSUPER 0.4 -19.8 -19830 10.3 PKNOX1 ATF1 FEZF1 GLIS2 ZNF213 FOS ATF7 MAFF SMARCA4 GLIS1 TCF4 LINC01415 GC18P055423 GC18P055312
GH18J055415 Enhancer 1.1 Ensembl ENCODE dbSUPER 0.4 -7.8 -7804 0.5 CTCF MZF1 RAD21 ZNF664 CC2D1A ZNF366 ARID2 PATZ1 ZSCAN5C ZNF143 GC18P055423 GC18P055312 TCF4
GH18J055416 Enhancer 0.9 UCNEbase Ensembl dbSUPER 0.4 -6.2 -6216 0.3 RCOR1 GC18P055423 GC18P055312 TCF4
GH18J055349 Enhancer 1.8 VISTA UCNEbase Ensembl ENCODE dbSUPER 0.2 -71.9 -71920 3.1 MEIS2 PKNOX1 USF1 NANOG ZSCAN4 JUNB SIN3A USF2 EBF1 BATF GC18P055312 GC18P055423 TCF4
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around GC18P055423 on UCSC Golden Path with GeneCards custom track

Genomic Locations for GC18P055423 Gene

Genomic Locations for GC18P055423 Gene
chr18:55,423,170-55,423,273
(GRCh38/hg38)
Size:
104 bases
Orientation:
Plus strand

Genomic View for GC18P055423 Gene

Genes around GC18P055423 on UCSC Golden Path with GeneCards custom track

GC18P055423 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GC18P055423 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

ORGUL Member Location for GC18P055423 Gene

ORGUL Member Location for GC18P055423 gene

No data available for Cytogenetic band and RefSeq DNA sequence for GC18P055423 Gene

Proteins for GC18P055423 Gene

Post-translational modifications for GC18P055423 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GC18P055423 Gene

Domains & Families for GC18P055423 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GC18P055423 Gene

Function for GC18P055423 Gene

Phenotypes From GWAS Catalog for GC18P055423 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GC18P055423 Gene

Localization for GC18P055423 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for GC18P055423 Gene

Pathways & Interactions for GC18P055423 Gene

SuperPathways for GC18P055423 Gene

No Data Available

Interacting Proteins for GC18P055423 Gene

Gene Ontology (GO) - Biological Process for GC18P055423 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GC18P055423 Gene

Drugs & Compounds for GC18P055423 Gene

No Compound Related Data Available

Transcripts for GC18P055423 Gene

fRNAdb Secondary structures for GC18P055423 Gene

  • FR075198
  • FR068530

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for GC18P055423 Gene

No ASD Table

Relevant External Links for GC18P055423 Gene

GeneLoc Exon Structure for
GC18P055423

No data available for mRNA/cDNA for GC18P055423 Gene

Expression for GC18P055423 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GC18P055423 Gene

Orthologs for GC18P055423 Gene

No data available for Orthologs and Evolution for GC18P055423 Gene

Paralogs for GC18P055423 Gene

No data available for Paralogs for GC18P055423 Gene

Variants for GC18P055423 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for GC18P055423 Gene

Disorders for GC18P055423 Gene

No disorders were found for GC18P055423 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GC18P055423 Gene

Publications for GC18P055423 Gene

  1. Identification and classification of conserved RNA secondary structures in the human genome. (PMID: 16628248) Pedersen JS … Haussler D (PLoS computational biology 2006) 1
  2. RNAdb--a comprehensive mammalian noncoding RNA database. (PMID: 15608161) Pang KC … Mattick JS (Nucleic acids research 2005) 1
  3. Mapping of conserved RNA secondary structures predicts thousands of functional noncoding RNAs in the human genome. (PMID: 16273071) Washietl S … Stadler PF (Nature biotechnology 2005) 1

Products for GC18P055423 Gene

Sources for GC18P055423 Gene

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