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Aliases for GC18P048133 Gene

Subcategory (RNA class) for GC18P048133 Gene

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Quality Score for this RNA gene is

13.4

Aliases for GC18P048133 Gene

No Aliases found

ORGUL Members for GC18P048133 Gene

No data available for External Ids for GC18P048133 Gene

Summaries for GC18P048133 Gene

GeneCards Summary for GC18P048133 Gene

GC18P048133 is an RNA Gene, and is affiliated with the undefined RNA class.

fRNAdb sequence ontologies for GC18P048133 Gene

  • nc_conserved_region: Non-coding region of sequence similarity by descent from a common ancestor.

View fRNAdb secondary structures for GC18P048133

Additional gene information for GC18P048133 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for GC18P048133 Gene

Genomics for GC18P048133 Gene

GeneHancer (GH) Regulatory Elements for GC18P048133 Gene

Promoters and enhancers for GC18P048133 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH18J048132 Enhancer 1 ENCODE dbSUPER 650.7 +0.1 78 2.2 KLF17 MZF1 FEZF1 RFX5 ZNF121 SCRT2 RCOR1 ZNF362 CEBPB ZNF843 GC18P048133 RNU6-708P IER3IP1 ENSG00000278891 GC18M048089 ZBTB7C
GH18J048135 Promoter/Enhancer 1.6 Ensembl ENCODE dbSUPER 0.7 +4.4 4441 5.2 KLF17 FEZF1 KLF14 ZNF335 GLIS2 ZNF366 ZSCAN5C SCRT2 RCOR1 DEK MTCO2P2 GC18P048133 ENSG00000278891 GC18M048089 ZBTB7C
GH18J048129 Enhancer 0.6 ENCODE dbSUPER 0.7 -3.7 -3696 0.4 ZFHX2 ZIC2 WT1 GC18P048133 GC18M048089 LOC105372101 ZBTB7C
GH18J048131 Enhancer 0.6 dbSUPER 0.7 -2.3 -2314 0.5 RXRA MAX RAD21 YY1 NR2F2 SP1 JUND ATF3 EGR1 HNF4G GC18P048133 GC18M048089 LOC105372101 ZBTB7C
GH18J048130 Enhancer 0.5 ENCODE dbSUPER 0.7 -4.0 -3966 0.1 ZFHX2 GC18P048133 GC18M048089 LOC105372101 ZBTB7C
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around GC18P048133 on UCSC Golden Path with GeneCards custom track

Genomic Locations for GC18P048133 Gene

Genomic Locations for GC18P048133 Gene
chr18:48,133,685-48,133,972
(GRCh38/hg38)
Size:
288 bases
Orientation:
Plus strand

Genomic View for GC18P048133 Gene

Genes around GC18P048133 on UCSC Golden Path with GeneCards custom track

GC18P048133 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GC18P048133 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

ORGUL Member Location for GC18P048133 Gene

ORGUL Member Location for GC18P048133 gene

No data available for Cytogenetic band and RefSeq DNA sequence for GC18P048133 Gene

Proteins for GC18P048133 Gene

Post-translational modifications for GC18P048133 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GC18P048133 Gene

Domains & Families for GC18P048133 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GC18P048133 Gene

Function for GC18P048133 Gene

Phenotypes From GWAS Catalog for GC18P048133 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GC18P048133 Gene

Localization for GC18P048133 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for GC18P048133 Gene

Pathways & Interactions for GC18P048133 Gene

SuperPathways for GC18P048133 Gene

No Data Available

Interacting Proteins for GC18P048133 Gene

Gene Ontology (GO) - Biological Process for GC18P048133 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GC18P048133 Gene

Drugs & Compounds for GC18P048133 Gene

No Compound Related Data Available

Transcripts for GC18P048133 Gene

fRNAdb Secondary structures for GC18P048133 Gene

  • FR036361
  • FR016349

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for GC18P048133 Gene

No ASD Table

Relevant External Links for GC18P048133 Gene

GeneLoc Exon Structure for
GC18P048133

No data available for mRNA/cDNA for GC18P048133 Gene

Expression for GC18P048133 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GC18P048133 Gene

Orthologs for GC18P048133 Gene

No data available for Orthologs and Evolution for GC18P048133 Gene

Paralogs for GC18P048133 Gene

No data available for Paralogs for GC18P048133 Gene

Variants for GC18P048133 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for GC18P048133 Gene

Disorders for GC18P048133 Gene

No disorders were found for GC18P048133 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GC18P048133 Gene

Publications for GC18P048133 Gene

  1. Identification and classification of conserved RNA secondary structures in the human genome. (PMID: 16628248) Pedersen JS … Haussler D (PLoS computational biology 2006) 1
  2. RNAdb--a comprehensive mammalian noncoding RNA database. (PMID: 15608161) Pang KC … Mattick JS (Nucleic acids research 2005) 1
  3. Mapping of conserved RNA secondary structures predicts thousands of functional noncoding RNAs in the human genome. (PMID: 16273071) Washietl S … Stadler PF (Nature biotechnology 2005) 1

Products for GC18P048133 Gene

Sources for GC18P048133 Gene

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