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Aliases for GC18P005557 Gene

Subcategory (RNA class) for GC18P005557 Gene

Y RNA

Quality Score for this RNA gene is

15

Aliases for GC18P005557 Gene

No Aliases found

ORGUL Members for GC18P005557 Gene

No data available for External Ids for GC18P005557 Gene

Summaries for GC18P005557 Gene

GeneCards Summary for GC18P005557 Gene

GC18P005557 is an RNA Gene, and is affiliated with the Y RNA class.

fRNAdb sequence ontologies for GC18P005557 Gene

  • Y RNA: Y RNAs are components of the Ro ribonucleoprotein particle (Ro RNP), in association with Ro60 and La proteins. The Y RNAs and Ro60 and La proteins are well conserved, but the function of the Ro RNP is not known. In humans the RNA component can be one of four small RNAs -- hY1, hY3, hY4 and hY5. These small RNAs are predicted to fold into a conserved secondary structure containing three stem structures. The largest of the four, hY1, contains an additional hairpin. This family includes a significant number of annotated pseudogenes and the model is expected to discriminate poorly between real and Y RNA related pseudogenes.

View fRNAdb secondary structures for GC18P005557

Additional gene information for GC18P005557 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for GC18P005557 Gene

Genomics for GC18P005557 Gene

GeneHancer (GH) Regulatory Elements for GC18P005557 Gene

Promoters and enhancers for GC18P005557 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH18J005555 Enhancer 0.5 ENCODE 650.7 -1.2 -1187 1.6 FOXA2 SP5 CEBPA NR2F6 CEBPG ZNF644 GC18P005557 GC18M005377 EPB41L3
GH18J005542 Promoter/Enhancer 2 EPDnew FANTOM5 Ensembl ENCODE 0.4 -14.5 -14477 2.5 KLF14 ZNF335 GLIS2 EGR2 SP3 ZNF398 REST PRDM6 GLIS1 ZNF341 EPB41L3 GC18P005557 GC18M005377
GH18J005538 Enhancer 0.5 FANTOM5 0.4 -19.0 -19046 0.4 POLR2A PRDM10 PRDM4 EZH2 EPB41L3 GC18M005377 GC18P005557
GH18J005527 Enhancer 0.4 ENCODE dbSUPER 0.3 -30.1 -30104 0.2 EPB41L3 GC18M005377 GC18P005557
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around GC18P005557 on UCSC Golden Path with GeneCards custom track

Genomic Locations for GC18P005557 Gene

Genomic Locations for GC18P005557 Gene
chr18:5,557,877-5,557,994
(GRCh38/hg38)
Size:
118 bases
Orientation:
Plus strand

Genomic View for GC18P005557 Gene

Genes around GC18P005557 on UCSC Golden Path with GeneCards custom track

GC18P005557 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GC18P005557 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

ORGUL Member Location for GC18P005557 Gene

ORGUL Member Location for GC18P005557 gene

No data available for Cytogenetic band and RefSeq DNA sequence for GC18P005557 Gene

Proteins for GC18P005557 Gene

Post-translational modifications for GC18P005557 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GC18P005557 Gene

Domains & Families for GC18P005557 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GC18P005557 Gene

Function for GC18P005557 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GC18P005557 Gene

Localization for GC18P005557 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for GC18P005557 Gene

Pathways & Interactions for GC18P005557 Gene

SuperPathways for GC18P005557 Gene

No Data Available

Interacting Proteins for GC18P005557 Gene

Gene Ontology (GO) - Biological Process for GC18P005557 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GC18P005557 Gene

Drugs & Compounds for GC18P005557 Gene

No Compound Related Data Available

Transcripts for GC18P005557 Gene

fRNAdb Secondary structures for GC18P005557 Gene

  • FR181316

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for GC18P005557 Gene

No ASD Table

Relevant External Links for GC18P005557 Gene

GeneLoc Exon Structure for
GC18P005557

No data available for mRNA/cDNA for GC18P005557 Gene

Expression for GC18P005557 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GC18P005557 Gene

Orthologs for GC18P005557 Gene

No data available for Orthologs and Evolution for GC18P005557 Gene

Paralogs for GC18P005557 Gene

No data available for Paralogs for GC18P005557 Gene

Variants for GC18P005557 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for GC18P005557 Gene

Disorders for GC18P005557 Gene

No disorders were found for GC18P005557 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GC18P005557 Gene

Publications for GC18P005557 Gene

  1. Conserved features of Y RNAs: a comparison of experimentally derived secondary structures. (PMID: 10606662) Teunissen SW … Pruijn GJ (Nucleic acids research 2000) 1
  2. Ro ribonucleoproteins contribute to the resistance of Deinococcus radiodurans to ultraviolet irradiation. (PMID: 10766734) Chen X … Wolin SL (Genes & development 2000) 1
  3. Caenorhabditis elegans embryos contain only one major species of Ro RNP. (PMID: 7489501) Van Horn DJ … Wolin SL (RNA (New York, N.Y.) 1995) 1

Products for GC18P005557 Gene

Sources for GC18P005557 Gene

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