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Aliases for GC18M062732 Gene

Subcategory (RNA class) for GC18M062732 Gene

snRNA

Quality Score for this RNA gene is

15

Aliases for GC18M062732 Gene

No Aliases found

ORGUL Members for GC18M062732 Gene

No data available for External Ids for GC18M062732 Gene

Summaries for GC18M062732 Gene

GeneCards Summary for GC18M062732 Gene

GC18M062732 is an RNA Gene, and is affiliated with the snRNA class.

fRNAdb sequence ontologies for GC18M062732 Gene

  • U6_snRNA: U6 snRNA is a component of the spliceosome which is involved in splicing pre-mRNA. The putative secondary structure consensus base pairing is confined to a short 5' stem loop, but U6 snRNA is thought to form extensive base-pair interactions with U4 snRNA.

Additional gene information for GC18M062732 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for GC18M062732 Gene

Genomics for GC18M062732 Gene

GeneHancer (GH) Regulatory Elements for GC18M062732 Gene

Promoters and enhancers for GC18M062732 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH18J062714 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 0.4 +14.5 14524 5.2 HDGF PKNOX1 FOXA2 ARID4B SIN3A FEZF1 IRF4 YY1 ZNF766 ZNF213 PHLPP1 GC18M062732 RNU6-142P
GH18J062739 Enhancer 1.3 Ensembl ENCODE dbSUPER 0.4 -11.1 -11056 4.9 PKNOX1 FOXA2 ARID4B FEZF1 ETS1 YY1 ZNF121 ZFP91 FOS SP3 PHLPP1 KDSR GC18M062732 RNU6-142P LOC105372160
GH18J062723 Enhancer 0.9 ENCODE dbSUPER 0.4 +7.5 7479 0.7 SOX13 GATAD2A TFAP4 FOXA2 NFIA SAP130 FOXA3 ARID4B KAT7 ETV5 GC18M062732 PHLPP1 RNU6-142P
GH18J062749 Enhancer 0.9 Ensembl ENCODE dbSUPER 0.4 -19.9 -19935 3.3 SCRT1 SP1 NANOG SCRT2 ZNF548 PRDM1 ETS1 PHLPP1 ZCCHC2 GC18M062732 RNU6-142P LOC105372160
GH18J062766 Enhancer 1 Ensembl ENCODE dbSUPER 0.3 -36.5 -36476 3.2 SOX13 GATAD2A SRF JUN HLF CEBPB CEBPG ZIC2 PRDM6 JUND PHLPP1 RNU6-142P LOC105372160 GC18M062732
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around GC18M062732 on UCSC Golden Path with GeneCards custom track

Genomic Locations for GC18M062732 Gene

Genomic Locations for GC18M062732 Gene
chr18:62,731,225-62,731,332
(GRCh38/hg38)
Size:
108 bases
Orientation:
Minus strand

Genomic View for GC18M062732 Gene

Genes around GC18M062732 on UCSC Golden Path with GeneCards custom track

GC18M062732 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GC18M062732 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for Cytogenetic band and RefSeq DNA sequence for GC18M062732 Gene

Proteins for GC18M062732 Gene

Post-translational modifications for GC18M062732 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GC18M062732 Gene

Domains & Families for GC18M062732 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GC18M062732 Gene

Function for GC18M062732 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GC18M062732 Gene

Localization for GC18M062732 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for GC18M062732 Gene

Pathways & Interactions for GC18M062732 Gene

SuperPathways for GC18M062732 Gene

No Data Available

Interacting Proteins for GC18M062732 Gene

Gene Ontology (GO) - Biological Process for GC18M062732 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GC18M062732 Gene

Drugs & Compounds for GC18M062732 Gene

No Compound Related Data Available

Transcripts for GC18M062732 Gene

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for GC18M062732 Gene

No ASD Table

Relevant External Links for GC18M062732 Gene

GeneLoc Exon Structure for
GC18M062732

No data available for mRNA/cDNA for GC18M062732 Gene

Expression for GC18M062732 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GC18M062732 Gene

Orthologs for GC18M062732 Gene

No data available for Orthologs and Evolution for GC18M062732 Gene

Paralogs for GC18M062732 Gene

No data available for Paralogs for GC18M062732 Gene

Variants for GC18M062732 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for GC18M062732 Gene

Disorders for GC18M062732 Gene

No disorders were found for GC18M062732 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GC18M062732 Gene

Publications for GC18M062732 Gene

  1. The uRNA database. (PMID: 9016512) Zwieb C (Nucleic acids research 1997) 1
  2. Spliceosomal small nuclear RNAs of Tetrahymena thermophila and some possible snRNA-snRNA base-pairing interactions. (PMID: 1960724) Orum H … Engberg J (Journal of molecular biology 1991) 1
  3. The spliceosomal snRNAs of Caenorhabditis elegans. (PMID: 2339054) Thomas J … Blumenthal T (Nucleic acids research 1990) 1

Products for GC18M062732 Gene

Sources for GC18M062732 Gene

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