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Aliases for GC18M058819 Gene

Subcategory (RNA class) for GC18M058819 Gene

snoRNA

Quality Score for this RNA gene is

15

Aliases for GC18M058819 Gene

No Aliases found

ORGUL Members for GC18M058819 Gene

No data available for External Ids for GC18M058819 Gene

Summaries for GC18M058819 Gene

GeneCards Summary for GC18M058819 Gene

GC18M058819 is an RNA Gene, and is affiliated with the snoRNA class.

fRNAdb sequence ontologies for GC18M058819 Gene

  • C_D_box_snoRNA: Most box C/D snoRNAs also contain long (>10 nt) sequences complementary to rRNA. Boxes C and D, as well as boxes C' and D', are usually located in close proximity, and form a structure known as the box C/D motif. This motif is important for snoRNA stability, processing, nucleolar targeting and function. A small number of box C/D snoRNAs are involved in rRNA processing; most, however, are known or predicted to serve as guide RNAs in ribose methylation of rRNA. Targeting involves direct base pairing of the snoRNA at the rRNA site to be modified and selection of a rRNA nucleotide a fixed distance from box D or D'.

Additional gene information for GC18M058819 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for GC18M058819 Gene

Genomics for GC18M058819 Gene

GeneHancer (GH) Regulatory Elements for GC18M058819 Gene

Promoters and enhancers for GC18M058819 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH18J058845 Enhancer 1.4 FANTOM5 Ensembl ENCODE dbSUPER 0.3 -29.9 -29923 7.4 PKNOX1 USF1 MAX BACH1 SIN3A ETS1 ZNF121 GATA3 EGR1 POLR2A ENSG00000199713 ZNF532 GC18M058819
GH18J058816 Enhancer 0.3 ENCODE 0.7 +2.5 2462 0.2 NRF1 ENSG00000199713 GC18M058819 LINC01926
GH18J058827 Enhancer 0.5 FANTOM5 0.4 -8.7 -8713 0.3 NFATC3 NFYB ALPK2 ENSG00000199713 GC18M058819 LINC01926 ZNF532
GH18J058838 Enhancer 0.5 dbSUPER 0.4 -19.4 -19445 0.8 FOXA2 FOXA3 NR2F6 TEAD3 ZNF532 GC18M058819 ENSG00000199713
GH18J058843 Enhancer 0.4 ENCODE dbSUPER 0.3 -24.4 -24428 0.2 ZNF532 ENSG00000199713 GC18M058819
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around GC18M058819 on UCSC Golden Path with GeneCards custom track

Genomic Locations for GC18M058819 Gene

Genomic Locations for GC18M058819 Gene
chr18:58,818,882-58,819,016
(GRCh38/hg38)
Size:
135 bases
Orientation:
Minus strand

Genomic View for GC18M058819 Gene

Genes around GC18M058819 on UCSC Golden Path with GeneCards custom track

GC18M058819 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GC18M058819 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for Cytogenetic band and RefSeq DNA sequence for GC18M058819 Gene

Proteins for GC18M058819 Gene

Post-translational modifications for GC18M058819 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GC18M058819 Gene

Domains & Families for GC18M058819 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GC18M058819 Gene

Function for GC18M058819 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GC18M058819 Gene

Localization for GC18M058819 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for GC18M058819 Gene

Pathways & Interactions for GC18M058819 Gene

SuperPathways for GC18M058819 Gene

No Data Available

Interacting Proteins for GC18M058819 Gene

Gene Ontology (GO) - Biological Process for GC18M058819 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GC18M058819 Gene

Drugs & Compounds for GC18M058819 Gene

No Compound Related Data Available

Transcripts for GC18M058819 Gene

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for GC18M058819 Gene

No ASD Table

Relevant External Links for GC18M058819 Gene

GeneLoc Exon Structure for
GC18M058819

No data available for mRNA/cDNA for GC18M058819 Gene

Expression for GC18M058819 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GC18M058819 Gene

Orthologs for GC18M058819 Gene

No data available for Orthologs and Evolution for GC18M058819 Gene

Paralogs for GC18M058819 Gene

No data available for Paralogs for GC18M058819 Gene

Variants for GC18M058819 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for GC18M058819 Gene

Disorders for GC18M058819 Gene

No disorders were found for GC18M058819 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GC18M058819 Gene

Publications for GC18M058819 Gene

  1. The U8 snoRNA gene family: identification and characterization of distinct, functional U8 genes in Xenopus. (PMID: 11675000) Peculis BA … McDowell K (Gene 2001) 1
  2. The sequence of the 5' end of the U8 small nucleolar RNA is critical for 5.8S and 28S rRNA maturation. (PMID: 9199304) Peculis BA (Molecular and cellular biology 1997) 1

Products for GC18M058819 Gene

Sources for GC18M058819 Gene

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