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Aliases for GC18M056080 Gene

Subcategory (RNA class) for GC18M056080 Gene

snoRNA

Quality Score for this RNA gene is

15

Aliases for GC18M056080 Gene

No Aliases found

ORGUL Members for GC18M056080 Gene

No data available for External Ids for GC18M056080 Gene

Summaries for GC18M056080 Gene

GeneCards Summary for GC18M056080 Gene

GC18M056080 is an RNA Gene, and is affiliated with the snoRNA class.

fRNAdb sequence ontologies for GC18M056080 Gene

  • H_ACA_box_snoRNA: Members of the box H/ACA family contain an ACA triplet, exactly 3 nt upstream from the 3' end and an H-box in a hinge region that links two structurally similar functional domains of the molecule. Both boxes are important for snoRNA biosynthesis and function. A few box H/ACA snoRNAs are involved in rRNA processing; most others are known or predicted to participate in selection of uridine nucleosides in rRNA to be converted to pseudouridines. Site selection is mediated by direct base pairing of the snoRNA with rRNA through one or both targeting domains.

Additional gene information for GC18M056080 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for GC18M056080 Gene

Genomics for GC18M056080 Gene

GeneHancer (GH) Regulatory Elements for GC18M056080 Gene

Promoters and enhancers for GC18M056080 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH18J056082 Enhancer 0.6 Ensembl ENCODE 0.7 -4.0 -4038 2.6 CTCF RAD21 NR2F2 ENSG00000206129 ENSG00000201816 GC18M056080 LINC01905 GC18M056049 LINC01539
GH18J056123 Enhancer 0.3 ENCODE 0.3 -44.8 -44798 1 FOS GC18M056049 LINC01539 GC18M056080 ENSG00000201816 ENSG00000206129
GH18J056085 Enhancer 0.2 ENCODE 0.4 -6.2 -6171 0.2 ENSG00000201816 GC18M056080 LINC01905 GC18M056049 LINC01539 ENSG00000206129
GH18J056091 Enhancer 0.2 FANTOM5 0.4 -12.4 -12446 0.3 ENSG00000201816 GC18M056080 GC18M056049 LINC01539 LINC01905 ENSG00000206129
GH18J056065 Enhancer 0.2 ENCODE 0.4 +12.2 12203 3.3 ENSG00000206129 ENSG00000267399 LOC105372133 ENSG00000201816 GC18M056080 LINC01905 GC18M056049
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around GC18M056080 on UCSC Golden Path with GeneCards custom track

Genomic Locations for GC18M056080 Gene

Genomic Locations for GC18M056080 Gene
chr18:56,079,393-56,079,594
(GRCh38/hg38)
Size:
202 bases
Orientation:
Minus strand

Genomic View for GC18M056080 Gene

Genes around GC18M056080 on UCSC Golden Path with GeneCards custom track

GC18M056080 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GC18M056080 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for Cytogenetic band and RefSeq DNA sequence for GC18M056080 Gene

Proteins for GC18M056080 Gene

Post-translational modifications for GC18M056080 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GC18M056080 Gene

Domains & Families for GC18M056080 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GC18M056080 Gene

Function for GC18M056080 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GC18M056080 Gene

Localization for GC18M056080 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for GC18M056080 Gene

Pathways & Interactions for GC18M056080 Gene

SuperPathways for GC18M056080 Gene

No Data Available

Interacting Proteins for GC18M056080 Gene

Gene Ontology (GO) - Biological Process for GC18M056080 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GC18M056080 Gene

Drugs & Compounds for GC18M056080 Gene

No Compound Related Data Available

Transcripts for GC18M056080 Gene

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for GC18M056080 Gene

No ASD Table

Relevant External Links for GC18M056080 Gene

GeneLoc Exon Structure for
GC18M056080

No data available for mRNA/cDNA for GC18M056080 Gene

Expression for GC18M056080 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GC18M056080 Gene

Orthologs for GC18M056080 Gene

No data available for Orthologs and Evolution for GC18M056080 Gene

Paralogs for GC18M056080 Gene

No data available for Paralogs for GC18M056080 Gene

Variants for GC18M056080 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for GC18M056080 Gene

Disorders for GC18M056080 Gene

No disorders were found for GC18M056080 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GC18M056080 Gene

Publications for GC18M056080 Gene

  1. Comparative structure analysis of vertebrate U17 small nucleolar RNA (snoRNA). (PMID: 11821910) Cervelli M … Mariottini P (Journal of molecular evolution 2002) 1
  2. 5'ETS rRNA processing facilitated by four small RNAs: U14, E3, U17, and U3. (PMID: 8903340) Enright CA … Sollner-Webb B (RNA (New York, N.Y.) 1996) 1

Products for GC18M056080 Gene

Sources for GC18M056080 Gene

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