Free for academic non-profit institutions. Other users need a Commercial license

Aliases for GC18M054223 Gene

Subcategory (RNA class) for GC18M054223 Gene

snoRNA

Quality Score for this RNA gene is

22

Aliases for GC18M054223 Gene

No Aliases found

No data available for External Ids for GC18M054223 Gene

Summaries for GC18M054223 Gene

GeneCards Summary for GC18M054223 Gene

GC18M054223 is an RNA Gene, and is affiliated with the snoRNA class.

fRNAdb sequence ontologies for GC18M054223 Gene

  • H_ACA_box_snoRNA: Members of the box H/ACA family contain an ACA triplet, exactly 3 nt upstream from the 3' end and an H-box in a hinge region that links two structurally similar functional domains of the molecule. Both boxes are important for snoRNA biosynthesis and function. A few box H/ACA snoRNAs are involved in rRNA processing; most others are known or predicted to participate in selection of uridine nucleosides in rRNA to be converted to pseudouridines. Site selection is mediated by direct base pairing of the snoRNA with rRNA through one or both targeting domains.

View fRNAdb secondary structures for GC18M054223

Additional gene information for GC18M054223 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for GC18M054223 Gene

Genomics for GC18M054223 Gene

GeneHancer (GH) Regulatory Elements for GC18M054223 Gene

Promoters and enhancers for GC18M054223 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH18J054221 Promoter/Enhancer 2 EPDnew Ensembl ENCODE 650.7 -1.2 -1232 3.6 HDGF PKNOX1 ARID4B SIN3A IRF4 YY1 ZNF207 ZNF143 SP3 SP5 MBD2 GC18M054223 GC18M054224 SNORA37
GH18J054220 Enhancer 0.5 ENCODE 650.7 +1.7 1746 1 HDGF PKNOX1 KLF1 POLR2A HLF MEF2B PRDM4 GC18M054223 GC18M054224 SNORA37 POLI MBD2 ENSG00000264296
GH18J054209 Enhancer 1 Ensembl ENCODE 0.4 +12.8 12757 1.1 PKNOX1 SMAD1 STAT5A BMI1 BATF IRF4 ATF7 ETV6 BCLAF1 IKZF2 POLI C18orf54 STARD6 GC18M054223 GC18M054224 SNORA37 MBD2 ENSG00000264296
GH18J054217 Enhancer 0.5 ENCODE 0.7 +4.4 4382 1.4 HDGF NR2F1 IKZF1 ATF2 RUNX3 YY1 POLI GC18M054223 GC18M054224 SNORA37 MBD2 ENSG00000264296
GH18J054146 Enhancer 1.3 FANTOM5 Ensembl ENCODE 0.2 +73.4 73365 5.1 HDGF PKNOX1 STAT5A YBX1 BATF IRF4 EGR1 ATF7 FOS ETV6 POLI ENSG00000264296 SNORA37 GC18M054223 GC18M054224
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around GC18M054223 on UCSC Golden Path with GeneCards custom track

Genomic Locations for GC18M054223 Gene

Genomic Locations for GC18M054223 Gene
chr18:54,222,283-54,222,412
(GRCh38/hg38)
Size:
130 bases
Orientation:
Minus strand

Genomic View for GC18M054223 Gene

Genes around GC18M054223 on UCSC Golden Path with GeneCards custom track

GC18M054223 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GC18M054223 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

ORGUL Member Location for GC18M054223 Gene

ORGUL Member Location for GC18M054223 gene

No data available for Cytogenetic band and RefSeq DNA sequence for GC18M054223 Gene

Proteins for GC18M054223 Gene

Post-translational modifications for GC18M054223 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GC18M054223 Gene

Domains & Families for GC18M054223 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GC18M054223 Gene

Function for GC18M054223 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GC18M054223 Gene

Localization for GC18M054223 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for GC18M054223 Gene

Pathways & Interactions for GC18M054223 Gene

SuperPathways for GC18M054223 Gene

No Data Available

Interacting Proteins for GC18M054223 Gene

Gene Ontology (GO) - Biological Process for GC18M054223 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GC18M054223 Gene

Drugs & Compounds for GC18M054223 Gene

No Compound Related Data Available

Transcripts for GC18M054223 Gene

fRNAdb Secondary structures for GC18M054223 Gene

  • FR316366

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for GC18M054223 Gene

No ASD Table

Relevant External Links for GC18M054223 Gene

GeneLoc Exon Structure for
GC18M054223

No data available for mRNA/cDNA for GC18M054223 Gene

Expression for GC18M054223 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GC18M054223 Gene

Orthologs for GC18M054223 Gene

No data available for Orthologs and Evolution for GC18M054223 Gene

Paralogs for GC18M054223 Gene

No data available for Paralogs for GC18M054223 Gene

Variants for GC18M054223 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for GC18M054223 Gene

Disorders for GC18M054223 Gene

No disorders were found for GC18M054223 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GC18M054223 Gene

Publications for GC18M054223 Gene

  1. The H-Invitational Database (H-InvDB), a comprehensive annotation resource for human genes and transcripts. (PMID: 18089548) Genome Information Integration Project And H-Invitational 2 … Gojobori T (Nucleic acids research 2008) 1
  2. snoRNA-LBME-db, a comprehensive database of human H/ACA and C/D box snoRNAs. (PMID: 16381836) Lestrade L … Weber MJ (Nucleic acids research 2006) 1
  3. NONCODE: an integrated knowledge database of non-coding RNAs. (PMID: 15608158) Liu C … Chen R (Nucleic acids research 2005) 1
  4. RNAdb--a comprehensive mammalian noncoding RNA database. (PMID: 15608161) Pang KC … Mattick JS (Nucleic acids research 2005) 1
  5. Integrative annotation of 21,037 human genes validated by full-length cDNA clones. (PMID: 15103394) Imanishi T … Sugano S (PLoS biology 2004) 1

Products for GC18M054223 Gene

Sources for GC18M054223 Gene

Content
Loading form....