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Aliases for GC18M051012 Gene

Subcategory (RNA class) for GC18M051012 Gene

snoRNA

Quality Score for this RNA gene is

15

Aliases for GC18M051012 Gene

No Aliases found

ORGUL Members for GC18M051012 Gene

No data available for External Ids for GC18M051012 Gene

Summaries for GC18M051012 Gene

GeneCards Summary for GC18M051012 Gene

GC18M051012 is an RNA Gene, and is affiliated with the snoRNA class.

fRNAdb sequence ontologies for GC18M051012 Gene

  • U3_snoRNA: U3 snoRNA is a member of the box C/D class of small nucleolar RNAs. The U3 snoRNA secondary structure is characterised by a small 5' domain (with boxes A and A'), and a larger 3' domain (with boxes B, C, C', and D), the two domains being linked by a single-stranded hinge. Boxes B and C form the B/C motif, which appears to be exclusive to U3 snoRNAs, and boxes C' and D form the C'/D motif. The latter is functionally similar to the C/D motifs found in other snoRNAs. The 5' domain and the hinge region act as a pre-rRNA-binding domain. The 3' domain has conserved protein-binding sites. Both the box B/C and box C'/D motifs are sufficient for nuclear retention of U3 snoRNA. The box C'/D motif is also necessary for nucleolar localization, stability and hypermethylation of U3 snoRNA. Both box B/C and C'/D motifs are involved in specific protein interactions and are necessary for the rRNA processing functions of U3 snoRNA.

View fRNAdb secondary structures for GC18M051012

Additional gene information for GC18M051012 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for GC18M051012 Gene

Genomics for GC18M051012 Gene

GeneHancer (GH) Regulatory Elements for GC18M051012 Gene

Promoters and enhancers for GC18M051012 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH18J051015 Enhancer 0.2 FANTOM5 0.7 -3.1 -3101 0 GC18M051012 GC18M051008 ENSG00000267699 GC18P050945
GH18J051016 Enhancer 0.3 ENCODE 0.4 -5.1 -5067 1.2 CTBP2 GC18M051008 GC18M051012 ENSG00000267699 GC18P050945
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around GC18M051012 on UCSC Golden Path with GeneCards custom track

Genomic Locations for GC18M051012 Gene

Genomic Locations for GC18M051012 Gene
chr18:51,012,190-51,012,407
(GRCh38/hg38)
Size:
218 bases
Orientation:
Minus strand

Genomic View for GC18M051012 Gene

Genes around GC18M051012 on UCSC Golden Path with GeneCards custom track

GC18M051012 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GC18M051012 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

ORGUL Member Location for GC18M051012 Gene

ORGUL Member Location for GC18M051012 gene

No data available for Cytogenetic band and RefSeq DNA sequence for GC18M051012 Gene

Proteins for GC18M051012 Gene

Post-translational modifications for GC18M051012 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GC18M051012 Gene

Domains & Families for GC18M051012 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GC18M051012 Gene

Function for GC18M051012 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GC18M051012 Gene

Localization for GC18M051012 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for GC18M051012 Gene

Pathways & Interactions for GC18M051012 Gene

SuperPathways for GC18M051012 Gene

No Data Available

Interacting Proteins for GC18M051012 Gene

Gene Ontology (GO) - Biological Process for GC18M051012 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GC18M051012 Gene

Drugs & Compounds for GC18M051012 Gene

No Compound Related Data Available

Transcripts for GC18M051012 Gene

fRNAdb Secondary structures for GC18M051012 Gene

  • FR125898
  • FR406744

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for GC18M051012 Gene

No ASD Table

Relevant External Links for GC18M051012 Gene

GeneLoc Exon Structure for
GC18M051012

No data available for mRNA/cDNA for GC18M051012 Gene

Expression for GC18M051012 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GC18M051012 Gene

Orthologs for GC18M051012 Gene

No data available for Orthologs and Evolution for GC18M051012 Gene

Paralogs for GC18M051012 Gene

No data available for Paralogs for GC18M051012 Gene

Variants for GC18M051012 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for GC18M051012 Gene

Disorders for GC18M051012 Gene

No disorders were found for GC18M051012 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GC18M051012 Gene

Publications for GC18M051012 Gene

  1. Nuclear retention elements of U3 small nucleolar RNA. (PMID: 10567566) Speckmann W … Terns MP (Molecular and cellular biology 1999) 1
  2. The uRNA database. (PMID: 9016512) Zwieb C (Nucleic acids research 1997) 1

Products for GC18M051012 Gene

Sources for GC18M051012 Gene

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