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Aliases for GC18M049514 Gene

Subcategory (RNA class) for GC18M049514 Gene

snoRNA

Quality Score for this RNA gene is

22

Aliases for GC18M049514 Gene

No Aliases found

No data available for External Ids for GC18M049514 Gene

Summaries for GC18M049514 Gene

GeneCards Summary for GC18M049514 Gene

GC18M049514 is an RNA Gene, and is affiliated with the snoRNA class.

fRNAdb sequence ontologies for GC18M049514 Gene

  • C_D_box_snoRNA: Most box C/D snoRNAs also contain long (>10 nt) sequences complementary to rRNA. Boxes C and D, as well as boxes C' and D', are usually located in close proximity, and form a structure known as the box C/D motif. This motif is important for snoRNA stability, processing, nucleolar targeting and function. A small number of box C/D snoRNAs are involved in rRNA processing; most, however, are known or predicted to serve as guide RNAs in ribose methylation of rRNA. Targeting involves direct base pairing of the snoRNA at the rRNA site to be modified and selection of a rRNA nucleotide a fixed distance from box D or D'.

View fRNAdb secondary structures for GC18M049514

Additional gene information for GC18M049514 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for GC18M049514 Gene

Genomics for GC18M049514 Gene

GeneHancer (GH) Regulatory Elements for GC18M049514 Gene

Promoters and enhancers for GC18M049514 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH18J049485 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 650.7 +1.9 1863 8.4 MLX FEZF1 DMAP1 YY1 E2F8 ZNF143 SP3 NFYC ZFP41 SSRP1 C18orf32 GC18M049490 GC18M049514 GC18M049515 GC18M049516 GC18M049517 GC18M049518 GC18M049519 GC18M049520 PIR54855
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around GC18M049514 on UCSC Golden Path with GeneCards custom track

Genomic Locations for GC18M049514 Gene

Genomic Locations for GC18M049514 Gene
chr18:49,491,663-49,491,729
(GRCh38/hg38)
Size:
67 bases
Orientation:
Minus strand

Genomic View for GC18M049514 Gene

Genes around GC18M049514 on UCSC Golden Path with GeneCards custom track

GC18M049514 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GC18M049514 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

ORGUL Member Location for GC18M049514 Gene

ORGUL Member Location for GC18M049514 gene

No data available for Cytogenetic band and RefSeq DNA sequence for GC18M049514 Gene

Proteins for GC18M049514 Gene

Post-translational modifications for GC18M049514 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GC18M049514 Gene

Domains & Families for GC18M049514 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GC18M049514 Gene

Function for GC18M049514 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GC18M049514 Gene

Localization for GC18M049514 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for GC18M049514 Gene

Pathways & Interactions for GC18M049514 Gene

SuperPathways for GC18M049514 Gene

No Data Available

Interacting Proteins for GC18M049514 Gene

Gene Ontology (GO) - Biological Process for GC18M049514 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GC18M049514 Gene

Drugs & Compounds for GC18M049514 Gene

No Compound Related Data Available

Transcripts for GC18M049514 Gene

fRNAdb Secondary structures for GC18M049514 Gene

  • FR345994

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for GC18M049514 Gene

No ASD Table

Relevant External Links for GC18M049514 Gene

GeneLoc Exon Structure for
GC18M049514

No data available for mRNA/cDNA for GC18M049514 Gene

Expression for GC18M049514 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GC18M049514 Gene

Orthologs for GC18M049514 Gene

No data available for Orthologs and Evolution for GC18M049514 Gene

Paralogs for GC18M049514 Gene

No data available for Paralogs for GC18M049514 Gene

Variants for GC18M049514 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for GC18M049514 Gene

Disorders for GC18M049514 Gene

No disorders were found for GC18M049514 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GC18M049514 Gene

Publications for GC18M049514 Gene

  1. snoRNA-LBME-db, a comprehensive database of human H/ACA and C/D box snoRNAs. (PMID: 16381836) Lestrade L … Weber MJ (Nucleic acids research 2006) 1
  2. NONCODE: an integrated knowledge database of non-coding RNAs. (PMID: 15608158) Liu C … Chen R (Nucleic acids research 2005) 1
  3. RNAdb--a comprehensive mammalian noncoding RNA database. (PMID: 15608161) Pang KC … Mattick JS (Nucleic acids research 2005) 1
  4. Purified box C/D snoRNPs are able to reproduce site-specific 2'-O-methylation of target RNA in vitro. (PMID: 12215523) Galardi S … Bozzoni I (Molecular and cellular biology 2002) 1
  5. Archaeal homologs of eukaryotic methylation guide small nucleolar RNAs: lessons from the Pyrococcus genomes. (PMID: 10736225) Gaspin C … Bachellerie JP (Journal of molecular biology 2000) 1

Products for GC18M049514 Gene

Sources for GC18M049514 Gene

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