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Aliases for GC18M048476 Gene

Subcategory (RNA class) for GC18M048476 Gene

rRNA

Quality Score for this RNA gene is

15

Aliases for GC18M048476 Gene

No Aliases found

ORGUL Members for GC18M048476 Gene

No data available for External Ids for GC18M048476 Gene

Summaries for GC18M048476 Gene

GeneCards Summary for GC18M048476 Gene

GC18M048476 is an RNA Gene, and is affiliated with the rRNA class.

fRNAdb sequence ontologies for GC18M048476 Gene

  • rRNA_5S: 5S ribosomal RNA (5S rRNA) is a component of the large ribosomal subunit in both prokaryotes and eukaryotes. In eukaryotes, it is synthesised by RNA polymerase III (the other eukaryotic rRNAs are cleaved from a 45S precursor synthesised by RNA polymerase I). In Xenopus oocytes, it has been shown that fingers 4-7 of the nine-zinc finger transcription factor TFIIIA can bind to the central region of 5S RNA. Thus, in addition to positively regulating 5S rRNA transcription, TFIIIA also stabilises 5S rRNA until it is required for transcription.

Additional gene information for GC18M048476 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for GC18M048476 Gene

Genomics for GC18M048476 Gene

GeneHancer (GH) Regulatory Elements for GC18M048476 Gene

Promoters and enhancers for GC18M048476 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH18J048475 Enhancer 0.8 Ensembl ENCODE 650.7 -0.4 -380 0.4 CTCF ZNF654 ERF REST KDM3A RAD21 ZNF205 XRCC5 ARID2 ZNF143 GC18M048476 RNA5SP456 ENSG00000277907
GH18J048452 Enhancer 1.3 Ensembl ENCODE dbSUPER 0.3 +21.1 21101 5 FOXA2 MLX ARID4B ZNF48 YY1 FOS RXRA SP5 NFYC MIER2 ZBTB7C CTIF RNA5SP456 GC18M048476
GH18J048446 Enhancer 1 Ensembl ENCODE 0.3 +28.8 28784 0.6 ELF3 RB1 ARID4B DMAP1 KLF14 ZNF48 RAD21 ZNF143 ZNF654 RXRA CTIF GC18M048476 RNA5SP456 ZBTB7C
GH18J048445 Enhancer 0.8 ENCODE 0.3 +29.9 29925 0.2 CTCF FOXA2 CEBPG ZNF644 ZBTB40 RAD21 YY1 TEAD3 ZFHX2 GATAD1 CTIF GC18M048476 RNA5SP456 ZBTB7C
GH18J048470 Enhancer 0.3 ENCODE 0.7 +4.9 4867 1 FOXA2 GC18M048476 RNA5SP456 ZBTB7C
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around GC18M048476 on UCSC Golden Path with GeneCards custom track

Genomic Locations for GC18M048476 Gene

Genomic Locations for GC18M048476 Gene
chr18:48,475,486-48,475,600
(GRCh38/hg38)
Size:
115 bases
Orientation:
Minus strand

Genomic View for GC18M048476 Gene

Genes around GC18M048476 on UCSC Golden Path with GeneCards custom track

GC18M048476 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GC18M048476 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for Cytogenetic band and RefSeq DNA sequence for GC18M048476 Gene

Proteins for GC18M048476 Gene

Post-translational modifications for GC18M048476 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GC18M048476 Gene

Domains & Families for GC18M048476 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GC18M048476 Gene

Function for GC18M048476 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GC18M048476 Gene

Localization for GC18M048476 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for GC18M048476 Gene

Pathways & Interactions for GC18M048476 Gene

SuperPathways for GC18M048476 Gene

No Data Available

Interacting Proteins for GC18M048476 Gene

Gene Ontology (GO) - Biological Process for GC18M048476 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GC18M048476 Gene

Drugs & Compounds for GC18M048476 Gene

No Compound Related Data Available

Transcripts for GC18M048476 Gene

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for GC18M048476 Gene

No ASD Table

Relevant External Links for GC18M048476 Gene

GeneLoc Exon Structure for
GC18M048476

No data available for mRNA/cDNA for GC18M048476 Gene

Expression for GC18M048476 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GC18M048476 Gene

Orthologs for GC18M048476 Gene

No data available for Orthologs and Evolution for GC18M048476 Gene

Paralogs for GC18M048476 Gene

No data available for Paralogs for GC18M048476 Gene

Variants for GC18M048476 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for GC18M048476 Gene

Disorders for GC18M048476 Gene

No disorders were found for GC18M048476 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GC18M048476 Gene

Publications for GC18M048476 Gene

  1. 5S Ribosomal RNA Database. (PMID: 11752286) Szymanski M … Barciszewski J (Nucleic acids research 2002) 1
  2. Crystal structure of the ribosome at 5.5 A resolution. (PMID: 11283358) Yusupov MM … Noller HF (Science (New York, N.Y.) 2001) 1
  3. The role of the central zinc fingers of transcription factor IIIA in binding to 5 S RNA. (PMID: 10926492) Searles MA … Klug A (Journal of molecular biology 2000) 1

Products for GC18M048476 Gene

Sources for GC18M048476 Gene

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